Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1052 ATGGTTTTTACTTCAATCCCTCCTTATCTTGATCCAGCCAACTGGCAACAACAGCAAAGTCATCACCACCATACAGGCACTCTCGTCGGCGGTGTGAGCTCTCAGCAGCATCAGCATCAGCAGCTTCTTTCTCCGCCGCAGCCTCCTCCGCCTTCGCTGCCTCCACCGCAGGCTCATGGAGCGGGAGGGACGGGTTCGATTAGGCCGGGTTCCATGGCTGATCGAGCTCGGATGGCGAACATACCCATGCCGGAGGCTGCTCTGAAATGTCCCAGGTGTGAATCTACCAACACCAAGTTTTGTTACTTTAACAACTACAGTCTCTCCCAGCCTCGCCACTTCTGCAAGACTTGTCGGAGGTACTGGACCCGTGGCGGCGCGATGAGGAATGTGCCTGTCGGAGGGGGATGCCGGAGGAACAAGAGAAGCAAACGAAGCAGCTCCAAGTCACCAGCGAGTTCAGATCGCCAAGCTGGGAGCACGAGTTCCACCAACTCAGTTTCTTCTACCAGTAACTCTGCCGGCGACTTAATAGGACTCACCCCTCATGCGCCACCACTGAGATTTATGTCTCCGTTACTTGCTGATTTCGCCGCTGGTGGAGACATGGGGTTAACCTACGGCGTAAACTATAACGCAATTTCAGCACCAATGGGAGGAGTAGTTGGCGACTTAAATTTCCAAATAGGAAGTGCTTTAGGTGGAGCAGGAAGTGGTGACACTACCACAGCTGCTGGAAGCAGCGGCGGATCTATCTTATTCGCTCCAGGTTTGGACCAATGGCGGGTGCCACAAACACAGCAATTTCCTTTCTTGGCTGGACTGGAAGGTTCACCTGGATTGTACTCGTTCGAAGGTGGCGCTGCCGGGGTAGAGGGACCAGGATACAGCGGCATGACGAGTCTCCGGTCAAAGGCGACGTCCTCGTTGGCTTCCGGGCTGATAACTCAGTTGGCTTCAGTGAAAATGGAAGACAACAATCCGCAGACGATGAATTTATCAAGACAATTCCTGGGAAGTGAGCAGTATTGGGGTACTGGCCATGGTGGTTCTTCTACTTCTGCTTGGACTGATCTTTCTGGATTTAGCTCACCTTCAACTACTAGCAATCCACTATAG 1119 0.5299 MVFTSIPPYLDPANWQQQQSHHHHTGTLVGGVSSQQHQHQQLLSPPQPPPPSLPPPQAHGAGGTGSIRPGSMADRARMANIPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRNKRSKRSSSKSPASSDRQAGSTSSTNSVSSTSNSAGDLIGLTPHAPPLRFMSPLLADFAAGGDMGLTYGVNYNAISAPMGGVVGDLNFQIGSALGGAGSGDTTTAAGSSGGSILFAPGLDQWRVPQTQQFPFLAGLEGSPGLYSFEGGAAGVEGPGYSGMTSLRSKATSSLASGLITQLASVKMEDNNPQTMNLSRQFLGSEQYWGTGHGGSSTSAWTDLSGFSSPSTTSNPL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1052 372 MobiDBLite consensus disorder prediction 150 177 - -
Lele38g1052 372 MobiDBLite consensus disorder prediction 13 42 - -
Lele38g1052 372 ProSitePatterns Zinc finger Dof-type signature. 90 126 IPR003851 GO:0003677|GO:0006355
Lele38g1052 372 ProSiteProfiles Zinc finger Dof-type profile. 88 142 IPR003851 GO:0003677|GO:0006355
Lele38g1052 372 MobiDBLite consensus disorder prediction 129 177 - -
Lele38g1052 372 MobiDBLite consensus disorder prediction 13 71 - -
Lele38g1052 372 Pfam Dof domain, zinc finger 87 142 IPR003851 GO:0003677|GO:0006355
Lele38g1052 372 MobiDBLite consensus disorder prediction 43 57 - -
Lele38g1052 372 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 169 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1052 Lele-ChrLele38 21886851 21888206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1052 1 349 C2C2-Dof Transcription Factor Family AT5G02460 41.053 6.56e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele38g1052 zf-Dof 4.5e-32 No_clan