Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1044 ATGATTGCTGGCGCTGTGACAAACTTTGGCACAGACGGCGAAAGCGTTTGGCCAATTGTGGAATTGGTTTTGGACGTAATGCCATTGGTGGTCGTGATGGAAGGTTCTATATTGTCACTGATTCAAGAGATGACGACCCTGTTAAACCAATACCAGGTTATGCTACTGGGTCACAGCGATTCATATGTAAGAGATAAGCAGATGCAAGTAACCATTGCCTACAATCATTTTGGGGAGGGTCTTATCCAAAGAATGCCGAGGTGCAGACATGGGTATTTCCATGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTAATCCCACCATTAACAGCCAAGGCAACCGATACCTTGCCCCTGGAAACCGATTTGCTAAGGAGGTGACAAAGAGAGTGGATACAGACTCTAGGATATGGAGGCATTGGAATTGGAGATCAATGGGAGACCTTATGTTAAATGGAGCCTATTTCACTTCAACAGGAAAGGGTGCTGCAGCAAGCTATGCCAGAGCCTCCAGTTTAGGGGCTAAGTCTTCTTCTATGGTTGGTGTCATTACTTCTGGAGCTGGTGTTCTTACCTGCCGCAGGGGCTTCACCTGTTAA 621 0.4638 MIAGAVTNFGTDGESVWPIVELVLDVMPLVVVMEGSILSLIQEMTTLLNQYQVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPGNRFAKEVTKRVDTDSRIWRHWNWRSMGDLMLNGAYFTSTGKGAAASYARASSLGAKSSSMVGVITSGAGVLTCRRGFTC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1044 206 Pfam Pectate lyase 49 121 IPR002022 -
Lele38g1044 206 SUPERFAMILY Pectin lyase-like 49 206 IPR011050 -
Lele38g1044 206 PRINTS Pollen allergen Amb family signature 84 103 IPR018082 -
Lele38g1044 206 PRINTS Pollen allergen Amb family signature 177 200 IPR018082 -
Lele38g1044 206 PRINTS Pollen allergen Amb family signature 106 125 IPR018082 -
Lele38g1044 206 PRINTS Pollen allergen Amb family signature 148 172 IPR018082 -
Lele38g1044 206 PANTHER PECTATE LYASE 18-RELATED 49 203 IPR045032 GO:0030570
Lele38g1044 206 Gene3D - 31 199 IPR012334 -
Lele38g1044 206 SMART amb_all 2 129 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1044 Lele-ChrLele38 21834008 21835391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1044 52 206 Polysaccharide Lyase AT4G13710 78.065 4.84e-88 265