Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1042 ATGGTCTTGATCCATCAGAAAGAGACTGAGACTGAAGAGAAAGTCGTGAATCCCTCTGAATCTGCGAAAACTGCGAAATCGTCAGCCTCCTCCAATGTCGATGACCATAAAGAAGCTTCCGATGGCTTCGAAACCGCCAGCGACACCGAGCTTGGCAGCGACGTAGATGATACGCATAAAGGACGGGAACAACAACATCAGCATCAGCATCAGGAGCTGGGGATTCCTCCGGGGACTGATTCTTCCGAAGAGGCATCACACGACGAGGAATTGAAACAGAAGGCATTGGCTCAAGCGAATGATGCAAAATTAGAAGGGAATAAGCTATTTGGGGATGGGCAATTTGAGGAGGCATTATCAAAGTATGAATTGGTCCAGATATGCCTTCATCTGTTGAAGTACGTTCAATATGCCATTCAAATCGTGCTCTTATACCAAGGGAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTTAATCCTGCATATCTGAAAGCTCTGGTGAGAAGAGGCGAGGCACATGAAAAGCTTGAGCATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCATAGAAATTGATCCTTCAAATGATCAAGCTAGGAGAACCATTCGGAAATTGGAACCCCTGGCAGCAGAAAAGCGGGAGAAGATGAAGGAAGAAATGATTGGTAAACTGAAAGAAATGGGCAATTCGTTGTTGGGCCGCTTTGGGATGAGCGTTGACAACTTCAAAGCTGTTCAAGACCCCAACACCGGTTCCTATTCCATCTCATTCCAACGCTAA 795 0.4516 MVLIHQKETETEEKVVNPSESAKTAKSSASSNVDDHKEASDGFETASDTELGSDVDDTHKGREQQHQHQHQELGIPPGTDSSEEASHDEELKQKALAQANDAKLEGNKLFGDGQFEEALSKYELVQICLHLLKYVQYAIQIVLLYQGKYEDTIKECTKALELNPAYLKALVRRGEAHEKLEHFEEAIADMKKIIEIDPSNDQARRTIRKLEPLAAEKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFKAVQDPNTGSYSISFQR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1042 264 SUPERFAMILY TPR-like 98 209 IPR011990 GO:0005515
Lele38g1042 264 MobiDBLite consensus disorder prediction 1 19 - -
Lele38g1042 264 ProSiteProfiles TPR repeat profile. 167 200 IPR019734 GO:0005515
Lele38g1042 264 Pfam Tetratricopeptide repeat 143 207 - -
Lele38g1042 264 SMART tpr_5 167 200 IPR019734 GO:0005515
Lele38g1042 264 SMART tpr_5 133 166 IPR019734 GO:0005515
Lele38g1042 264 MobiDBLite consensus disorder prediction 30 44 - -
Lele38g1042 264 MobiDBLite consensus disorder prediction 52 69 - -
Lele38g1042 264 Gene3D Tetratricopeptide repeat domain 87 226 IPR011990 GO:0005515
Lele38g1042 264 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 15 264 - -
Lele38g1042 264 MobiDBLite consensus disorder prediction 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1042 Lele-ChrLele38 21822576 21825534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1042 70 223 Calmodulin-binding Proteins AT3G25230 28.495 2.86e-08 52.4