Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1026 ATGGCCTTGCAGGGAACGGAAAACGCATACGAAGATACAAATCTTGCCGACAATGAACAAGAAGAAGTCTCCGAATCCTTTATTTGCTGCGTTTGTCTGGATCTGTTATACAAGCCTATTGTGCTGTCTTGTGGTCACACATCCTGTTTCTGGTGTGTTCATCAGTCAATGAGCCCACTTTGTGAGTCTTATTGTCCAATTTGTAGGCATCCATATTATCACTTTCCAACAATCTGTTGGATGCTTCACTTTTTGCTTCTGAAGGTGTATCCTGTTGCTTACAAGAGAAGGGAAATTCAAACTCTTGAGGACGAAAAGAAAGGGGACTGCTACTCTCCTCAATTTGATGATGATAATCTTAATCTTGTATCAGAAGTTAAGTTTGATCATCCTAGTACTTCATCTTCCTGCTATGCTGGAAATCTGGTTTCCAACCCTCAGAATGCAGGGTATTCCACAAGTACAGAGCAATCAGTGTCTGAAACTCAAAAGCAACATAAGGGCACTATCTGTTCTAAAGATGTTTTTGGTGGAACTGCTGAAGCTTTTGGGACTGCTGCTCAAGTAAAAATGCTGCCTCAGAATGATATGGAACAGAAGATATCAGTTGCAGATGTGATGTGTTCAATATGCAAGCAACTTCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCTTGCATCAAGAACTCAGCTGATGATATGCTTAGATGCAAAATTTGTCAACTTCCACATCCAAGGGGATTTCCAAGAGTTTGTTTGGAGCTTGATCACTTTATAAAGGAAAAATTTCCTGAGGAGTATGAAAAGCAAAGAGATGCTGTGCAACAGAGGCATATCAATGATAAACCTGAGACCCCTTCTTGTTCACTGAATAAGGGTGGAGGAGGAAAAGCAGCATGGTGGTCTGATCCTCACTCGAAAGTACATGTTGGAGTTGGCTGTGATTTTTGTGGGATGTATCCAATTGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGAGGGTTGGTTTCGATCTTTGTGCTGATTGTTATAAAATTCGCAGCAAGATTCCCGGTCGGTTCAATCAGCAGCACACTCCAGATCATCAATTTGAGCTTAAACAAATCAGCAGTATCCATAACATAATGATGCTGGTTACTGGGCGGTTAGGAGATGGTTCCATTGAAAATTTTCCTCTGGAAAGCATAGAGTTTAGACCTGAAGATCCCAATTTGGTTGTTGATGGTGATGGAGAAGATACCCAGAATGACTCTGAAGGCACTGATTGA 1287 0.411 MALQGTENAYEDTNLADNEQEEVSESFICCVCLDLLYKPIVLSCGHTSCFWCVHQSMSPLCESYCPICRHPYYHFPTICWMLHFLLLKVYPVAYKRREIQTLEDEKKGDCYSPQFDDDNLNLVSEVKFDHPSTSSSCYAGNLVSNPQNAGYSTSTEQSVSETQKQHKGTICSKDVFGGTAEAFGTAAQVKMLPQNDMEQKISVADVMCSICKQLLFHPVVLNCGHVYCESCIKNSADDMLRCKICQLPHPRGFPRVCLELDHFIKEKFPEEYEKQRDAVQQRHINDKPETPSCSLNKGGGGKAAWWSDPHSKVHVGVGCDFCGMYPIVGDRYRCKDCKERVGFDLCADCYKIRSKIPGRFNQQHTPDHQFELKQISSIHNIMMLVTGRLGDGSIENFPLESIEFRPEDPNLVVDGDGEDTQNDSEGTD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1026 428 FunFam E3 ubiquitin-protein ligase PRT1 20 115 - -
Lele38g1026 428 CDD RING-HC 208 245 - -
Lele38g1026 428 ProSiteProfiles Zinc finger ZZ-type profile. 314 378 IPR000433 GO:0008270
Lele38g1026 428 CDD RING-HC 29 68 - -
Lele38g1026 428 PANTHER UNCHARACTERIZED 18 373 - -
Lele38g1026 428 MobiDBLite consensus disorder prediction 407 428 - -
Lele38g1026 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Lele38g1026 428 SUPERFAMILY RING/U-box 204 266 - -
Lele38g1026 428 SMART ring_2 29 68 IPR001841 -
Lele38g1026 428 SMART ring_2 208 245 IPR001841 -
Lele38g1026 428 SUPERFAMILY RING/U-box 19 78 - -
Lele38g1026 428 FunFam E3 ubiquitin-protein ligase PRT1 195 290 - -
Lele38g1026 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 294 IPR013083 -
Lele38g1026 428 SMART zz_5 313 359 IPR000433 GO:0008270
Lele38g1026 428 SUPERFAMILY RING/U-box 306 371 - -
Lele38g1026 428 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Lele38g1026 428 Pfam Zinc finger, ZZ type 314 352 IPR000433 GO:0008270
Lele38g1026 428 Gene3D - 307 373 IPR043145 -
Lele38g1026 428 ProSiteProfiles Zinc finger RING-type profile. 208 246 IPR001841 -
Lele38g1026 428 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Lele38g1026 428 Pfam RING-type zinc-finger 208 242 IPR027370 -
Lele38g1026 428 FunFam E3 ubiquitin-protein ligase PRT1 308 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1026 Lele-ChrLele38 21665964 21671713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1026 14 69 C3H Transcription Factor Family AT1G74990 36.842 1.51e-07 48.5