Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1010 ATGAAACGCCCGATCGATGTGCCCTTGGCTTCGTCGGCTTCTTACTCCGTCGCCGCCGAACCTCCGAAGCCGGTGTTCTTAACGAAAGCTCAGCGTGAAGAATTGGCTCTTAAGCGGCGCCAAGAAGAAATCGCCGAACAAAGGCGCCGTCAGGAACAGCTGCTTTCTCGGAACCGCCCGTCCGACCCAAACTCCGATTCTAAACCTTCCGATTCCGACCGACGCGACCGCGACCGGGACCGGGACCGGGACCGGGACCGCGACCGCAATCGGGACAGGGATAGGGATAGAGAGCGGGAGCGAGAGAGGGACCGTGAGCGCGAGCGAGATAGGGCTCGTGATCGGGACCGTGAAACAGAACGCAGGAACCGTGAGAGGGAGCGCGAAGAGGAGGCTAAGGCTCGTGAGCGTTCTCGGAATGAGAAATTGCAAGAACGGGAGCGTGAGAAAGAGCTTGAATCGATCAAGGAGCAGTATCTTGGTTCGAAGAAGCCTAAGAAGCGGGTTATCAAACCGAGTGAGAAGTTTCGGTTTTCCTTCGATTGGGAGAACACGGAGGATACTTCTCGTGACATGAACATTCTCTACCAGAACCCTCACGAAGCACAGCTTCTCTTTGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGCGCGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCAGAAGAGGCCGTTGCACAACGGCGGAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGCCACTGGAGCGAGAAGAAGCTTGATGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCTTGAGCTATTGAAGGCGGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCTTCCATTCCTCTTGGCCTTCAGCAGCGTGATGTCATTGGCATTGCCGAGACAGGTTCAGGTAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATAAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTCGTTATGGCACCTACACGTGAACTTGCACAGCAGATTGAGGATGAGACCGTGAAGTTTGCTCAGTATCTTGGGATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGATTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATATGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACCACTTATATGTTCAGTGCCACCATGCCTCCTGCAGTTGAGCGGCTTGCTAGGAAATACTTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAAAAGTTTTTCAAACTGCAACGTCTGCTTGATGAACTTAATGACAAGACAGCTATTGTATTTGTTAACACTAAGAAAAATGCTGACATGGTTGCAAAGAATTTGGATAGGGAAGGCTACCGTGTAACAACTTTGCATGGTGGCAAGTCACAGGAGCAGAGAGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGTATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTATACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACCGGTGTTGCTACAACGTTCCTGACTCTTCAAGACTCTGATGTCTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTCCCTCCTGAATTGGCCAGACATGAGGCTTCAAAATTCAAGCCAGGATCCGTTCCTGATAGACCACCTAGACGAAATGACACTGTATTTGCACACTGA 2178 0.4917 MKRPIDVPLASSASYSVAAEPPKPVFLTKAQREELALKRRQEEIAEQRRRQEQLLSRNRPSDPNSDSKPSDSDRRDRDRDRDRDRDRDRNRDRDRDRERERERDRERERDRARDRDRETERRNREREREEEAKARERSRNEKLQEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSLELLKAVEKAGYKTPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNMKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSVPDRPPRRNDTVFAH 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1010 725 FunFam probable ATP-dependent RNA helicase DDX23 266 535 - -
Lele38g1010 725 Coils Coil 217 243 - -
Lele38g1010 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 558 702 IPR001650 -
Lele38g1010 725 MobiDBLite consensus disorder prediction 64 164 - -
Lele38g1010 725 Pfam DEAD/DEAH box helicase 330 520 IPR011545 GO:0003676|GO:0005524
Lele38g1010 725 MobiDBLite consensus disorder prediction 1 25 - -
Lele38g1010 725 MobiDBLite consensus disorder prediction 700 725 - -
Lele38g1010 725 SMART ultradead3 324 546 IPR014001 -
Lele38g1010 725 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 460 468 IPR000629 -
Lele38g1010 725 MobiDBLite consensus disorder prediction 38 56 - -
Lele38g1010 725 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 234 702 - -
Lele38g1010 725 MobiDBLite consensus disorder prediction 693 725 - -
Lele38g1010 725 MobiDBLite consensus disorder prediction 223 248 - -
Lele38g1010 725 FunFam probable ATP-dependent RNA helicase DDX23 536 724 - -
Lele38g1010 725 Gene3D - 536 723 IPR027417 -
Lele38g1010 725 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 305 333 IPR014014 GO:0003724
Lele38g1010 725 MobiDBLite consensus disorder prediction 38 168 - -
Lele38g1010 725 Coils Coil 27 57 - -
Lele38g1010 725 CDD SF2_C_DEAD 543 672 - -
Lele38g1010 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 531 IPR014001 -
Lele38g1010 725 Pfam Helicase conserved C-terminal domain 558 663 IPR001650 -
Lele38g1010 725 CDD DEADc_DDX23 316 532 - -
Lele38g1010 725 Coils Coil 95 153 - -
Lele38g1010 725 Gene3D - 266 535 IPR027417 -
Lele38g1010 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 684 IPR027417 -
Lele38g1010 725 SMART helicmild6 582 663 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1010 Lele-ChrLele38 21572267 21574444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1010 315 699 Eukaryotic Initiation Factors Gene Family AT1G72730 32.902 2.67e-59 204