Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1006 ATGCCATTAGCCGATAGCCATCGAGAATCATCTCTAGCCGGATTAACTCTCCACGATGTGTTAGCCAACCGAGCCGCCACGTCGAACCAGCAACAACTCACAAACAACTGTCGAACCCTCCTTGACATTATCCGTGAAGACGAACCCTCCAAAAACGATCGCAAGTCTTGGAAAGCCTTCAAAGAAAAGCTTCGGCTCAAACGCGTCGGATCTGCTTGGACTTCCTCCGTCCTTATCCCAACTTCGGATATCCCTATCCCTGTACGGAATAACAGAAACCTTTACACGCAGTTCCCCCGTTGTAGCTCCGTCCAAATCCTTACATTCCCCCCTGTGGACGAGACGACTCACACCATGGCTGATCCCACCGAAGAAGCCATCAAGAGTTCCAACCTCCCCAACATCTCGCGCCAGAGATCCACGCGCCAGGTCGGGGATACCGTTTTCGTCGACGATAAACTCAAGCCTCAGATGTCCCGCCCGAACTCCGCACGTCTGGCGGCGGCAGTGCGAGCTGATTCCATCCGGAGAGAGCGCGTGGTGACATTTCGTGATCCTGACAGTGATGACGACGAGGATGGAGACGGCCACCGCCAGCCGAAGGAGGAGAGGCAGATGTCTGCAAGGGAAGCTGTGGCAGCGCAGGAAGCGGCGGAGGCGGCAGCGATGGCGGAAGATGAGGAAGATGAAGACGACGAACCGTTCGGGGGTGGTGGAGGCGGTGTGACAATGTCGCTGATGGACTTGTTGGAGGAGACAGATCGGCAAATGGGGCTCGAAGGATCGAAGTACAGAATGGAAGATGACGACGACGAGGATTTCGATGAGGATGAAGACGAAGACGATGACGAAGGAGGTGAGGAGCACGATTGCTGCGTGTGCATGGTGAAGCATAAAGGTGCGGCTTTTGTGCCGTGTGGGCACTCGTTTTGCAGAATGTGTTCAAGGGAGCTCACTGTGAGCAAGGGAAATTGTCCTATCTGCAACAATTTCATCTTGGAGATTCTTGAGGTTTTCTGA 1020 0.5422 MPLADSHRESSLAGLTLHDVLANRAATSNQQQLTNNCRTLLDIIREDEPSKNDRKSWKAFKEKLRLKRVGSAWTSSVLIPTSDIPIPVRNNRNLYTQFPRCSSVQILTFPPVDETTHTMADPTEEAIKSSNLPNISRQRSTRQVGDTVFVDDKLKPQMSRPNSARLAAAVRADSIRRERVVTFRDPDSDDDEDGDGHRQPKEERQMSAREAVAAQEAAEAAAMAEDEEDEDDEPFGGGGGGVTMSLMDLLEETDRQMGLEGSKYRMEDDDDEDFDEDEDEDDDEGGEEHDCCVCMVKHKGAAFVPCGHSFCRMCSRELTVSKGNCPICNNFILEILEVF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1006 339 MobiDBLite consensus disorder prediction 258 287 - -
Lele38g1006 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 339 IPR013083 -
Lele38g1006 339 MobiDBLite consensus disorder prediction 221 235 - -
Lele38g1006 339 MobiDBLite consensus disorder prediction 171 209 - -
Lele38g1006 339 PANTHER OS01G0917900 PROTEIN 8 339 - -
Lele38g1006 339 SUPERFAMILY RING/U-box 290 335 - -
Lele38g1006 339 MobiDBLite consensus disorder prediction 128 145 - -
Lele38g1006 339 Pfam Zinc finger, C3HC4 type (RING finger) 288 332 - -
Lele38g1006 339 CDD RING-HC 291 328 - -
Lele38g1006 339 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Lele38g1006 339 MobiDBLite consensus disorder prediction 266 287 - -
Lele38g1006 339 SMART ring_2 291 328 IPR001841 -
Lele38g1006 339 MobiDBLite consensus disorder prediction 128 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1006 Lele-ChrLele38 21540905 21541924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1006 8 339 C3H Transcription Factor Family AT3G07120 39.793 3.68e-54 179