Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0999 ATGCTGCTGTATGGCTTCTTTTTCCAGCTTGCAAAGTGTTGGTTAAACGTTTTTGTCCATCCAGAAATTGAAGTCTCTCTTATTTTGTGCATTGAAATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGAAGCAATGGGATTTCCAAAGACAAAGGCAACTCGAGCACTCCATTATTCTGGTAATACTAATGTAGAGGATGCTATAAATTGGATTGTTGATCATGAGAATGATCCTGATATTGATGAGATGCCATTGGTAGATTCAGATATTGAGATTGATTCTTCTCAATCATTCCCTATTACAGAAGAAATGCGAATCAAAGCAGAGAAGCTAAGGAAGATTGGTTCTTCTCATTCATCCCCTATTACAGAAGAATTGCAAATCAAAGAACAGAAGCTAAGTAGGGAACAATTGCATAAGATGAAAGAAGAGAAAGAAAAGAAATTGGAGATAGAAAGGGAAAAGGAGAGGATCCAAGCAGGTAAGAAACTCAACGAGATGAAGCGAATTGCTGAAGAAAATGAAAGGCAAAGACATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAGTCATACAGAAACTAGAACAGGATAAGATAAATAGAAGGTCTAAACTTGGGTTGCCCATAGAGGGTCATAAAACCGTGAGATCTTCAGCTACAACAGTACAGAGAGAAAAGAATCCAAAGCCTGTTTACACTGTTACAAAAGTTGAGCTCTTGAGAGAATGTTTGACGTCCCTCAAGCGTAACCACCAGAATGAGCATGCAAGAGTGAGAAGGGCCTTCGAAACACTTTTAATTTATGTTGGGAATGTTGTCAAGCATCCCAACCAGGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCAGGATAGAGTTGGGAGTTTGAATGGAGGTGTGGAATTTCTTGAACTATGTGGGTTTGAGAGAATGGGTGAATTTTTGTATCTTCCTGAGGAAAAGGCGGACATAACACTACTAAATTCAGCTGGATTTGTGATAAAGTCTGCTATTACAAATCCCTACTTTGGACTTTTTAGTACTCGAACATTGTTATAA 1098 0.3852 MLLYGFFFQLAKCWLNVFVHPEIEVSLILCIEMAVPKVDKKMLEELEAMGFPKTKATRALHYSGNTNVEDAINWIVDHENDPDIDEMPLVDSDIEIDSSQSFPITEEMRIKAEKLRKIGSSHSSPITEELQIKEQKLSREQLHKMKEEKEKKLEIEREKERIQAGKKLNEMKRIAEENERQRHIALRKAEKEEEKRAREKVIQKLEQDKINRRSKLGLPIEGHKTVRSSATTVQREKNPKPVYTVTKVELLRECLTSLKRNHQNEHARVRRAFETLLIYVGNVVKHPNQEKYRKIRLSNPLFQDRVGSLNGGVEFLELCGFERMGEFLYLPEEKADITLLNSAGFVIKSAITNPYFGLFSTRTLL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0999 365 CDD UBA_PUB_plant 38 85 - -
Lele38g0999 365 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 37 78 IPR015940 -
Lele38g0999 365 Coils Coil 132 165 - -
Lele38g0999 365 SUPERFAMILY PUG domain-like 242 355 IPR036339 -
Lele38g0999 365 Pfam UBA/TS-N domain 39 75 IPR015940 -
Lele38g0999 365 Gene3D - 39 85 - -
Lele38g0999 365 PANTHER F13M7.16 PROTEIN 32 358 - -
Lele38g0999 365 SMART uba_6 39 77 IPR015940 -
Lele38g0999 365 Coils Coil 175 211 - -
Lele38g0999 365 SMART PGNneu 271 332 - -
Lele38g0999 365 Pfam PUB domain 268 336 IPR018997 -
Lele38g0999 365 SUPERFAMILY UBA-like 35 90 IPR009060 GO:0005515
Lele38g0999 365 Gene3D - 253 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0999 Lele-ChrLele38 21501817 21505035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0999 32 359 C2H2 Transcription Factor Family AT1G04850 52.711 7.40e-94 281