Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0989 ATGTTCTGGGTCGTTGTTCCGGCAACCTCGCTCGTCGTTCTGCGTCACCGCCGTTGCTCCTCCTTCTCTACCCACTCTGAAACTGTCTCGCCATTTCCAGGTGCCTTGCTTGCTCTCTGGTTCTTGCTCCCTCCCAGTCATCTCATCTTCTCTGCTTATTGTATCGGGACTTGGGGAGTTACTGGCAACGTAAAACTTTTGATGGGTGTGTCATCTGGCTCCAACATCAACCAGCAATCTTCTCCGAAAATGCTACCTCCACGTCAGCAATCTCGTGTTGGAGGACTGCAAACTTCACTATCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCTAGTTCACAAGAAACTTGGCCCACTGCTGAAGCTGTTGCAGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATTGCCCTGAAAAGTCAGTTATCCGTCGTGTTTCTACTGCTGACAAAATCACTCTTCAGGACATAGGAAGAGAAAGGGTTGATATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTTTTAGAAGAGCTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGATTTCTTCACTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGCCAAGACATTGATTAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACGTCAGTCTTTCACAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGATTCCTGCTGATGACTGTACCTGTGAAATTTGCACCAGTAGAAATGGTTTCTGCAACCTCTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTAAATACGTGCCGCTGGATTGGGTGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACCTAGTGAAATGTTTTTCAGGTGCCACGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCTGCATTGTGCCCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTAATGGTAGTAAAGACCCCAGAGGGAGGAAAGTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAATGGAATAGTGGAACCAAACGCTGCCTGCAGTGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGAATCCTCAAAGGGCCTTGAAAATGGAGAAAGTGGAAGGTTGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAAATGGAGGTAGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCATTGCTCTCGAGGCTTGTGATCGAGAATTAGCAGATAAGGCAAGGGAAGCGACAGAACTCAAGATGGACAGGCAAAAAAAGAAATTACAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCCAATGAGGCTAAACGAGAGGGCGAAAGGCTTCAGAGAATCGCCCTCGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAGCGAGGCTGAAGCTGAGAAGCAATATATCTATGAGAAGATTAAATTGCAGGAGAGTTCCCGTGCTTCGCAGAGTAGTAGTGGAGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTCTTTAGTGTACCTCCCAAGGCAGATAGTCAGCCTAATGAGCGCCACCCGTTCCAAACAAATCCATGA 1950 0.4456 MFWVVVPATSLVVLRHRRCSSFSTHSETVSPFPGALLALWFLLPPSHLIFSAYCIGTWGVTGNVKLLMGVSSGSNINQQSSPKMLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSQETWPTAEAVAGKKMDNGKAENDCPEKSVIRRVSTADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREDFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNVSLSQTSLIEIFVYKRCRNIACQNQIPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMFFRCHACKRTSELLGWVKDVFLHCAPSWDGEALMRELDFVSRIFNGSKDPRGRKVFWKCDDLKEKMKNGIVEPNAACSAILMFFQELEVESSKGLENGESGRLIAPQEACNRIAEVVQEAIRKMEVVADEKMRMFKKARIALEACDRELADKAREATELKMDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKREGERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYIYEKIKLQESSRASQSSSGDPSQMLMYSKIHDLLFSVPPKADSQPNERHPFQTNP 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0989 649 CDD PHD_OBE1_like 308 367 - -
Lele38g0989 649 SMART PHD_3 308 368 IPR001965 -
Lele38g0989 649 Pfam PHD - plant homeodomain finger protein 278 401 IPR032881 -
Lele38g0989 649 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 95 629 IPR004082 -
Lele38g0989 649 PIRSF UCP025218 72 634 IPR004082 -
Lele38g0989 649 MobiDBLite consensus disorder prediction 102 137 - -
Lele38g0989 649 MobiDBLite consensus disorder prediction 121 137 - -
Lele38g0989 649 Pfam Coiled-coil region of Oberon 496 628 IPR032535 -
Lele38g0989 649 Coils Coil 502 543 - -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 228 243 IPR004082 -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 315 335 IPR004082 -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 208 IPR004082 -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 388 407 IPR004082 -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 570 592 IPR004082 -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 531 551 IPR004082 -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 243 258 IPR004082 -
Lele38g0989 649 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 269 290 IPR004082 -
Lele38g0989 649 MobiDBLite consensus disorder prediction 630 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0989 Lele-ChrLele38 21446867 21450341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0989 278 380 PHD Gene Family AT5G57380 30.769 1.31e-08 56.2