Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0975 ATGGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGTCAACCAGCAAACACTAAGCTGTCAAGTAACAAGACAGTCAGGAGAATTCGTGTAAGAGGTGGCAATGTGAAATGGAGGGCTCTGCGATTGGATACGGGAAATTATTCATGGGGTAGTGAAGCCGTGACTCGCAAAACACGTATATTAGACGTGGTTTACAATGCCTCAAACAATGAACTTGTGCGAACACAAACCCTTGTGAAGAGTGCCATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCATTATGGTGTTGATATTGGTAGGAAGAAGAAAACAGCTGCCAAGAAGGATTCGGCGGAGGAGGGTGAAGCTGCTGCTGCTGCTGTAGAAGAGACAAAGAAAAGTAATCATGTGCTTAGAAAACTAGAGAAGCGTCAGAAGGATCGAAAGCTTGATCCCCACATTGAAGAGCAATTTGGCGGTGGCCGATTGTTGGCTTGCATTTCTTCTCGACCTGGGCAATGTGGCAGAGCTGATGGGTACATATTGGAAGGCAAGGAGTTGGAGTTTTACATGAAGAAGCTCCAGAGGAAGAAGGGAAAGGGTGCTGGTGCTGCTTGA 669 0.4723 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGEAAAAAVEETKKSNHVLRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0975 222 FunFam 40S ribosomal protein S8 109 178 - -
Lele38g0975 222 Gene3D - 28 215 - -
Lele38g0975 222 Gene3D Ribosomal protein S8e, subdomain 109 178 IPR042563 -
Lele38g0975 222 CDD Ribosomal_S8e_like 5 199 - -
Lele38g0975 222 FunFam 40S ribosomal protein S8 32 163 - -
Lele38g0975 222 FunFam 40S ribosomal protein S8 164 217 - -
Lele38g0975 222 MobiDBLite consensus disorder prediction 11 26 - -
Lele38g0975 222 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lele38g0975 222 MobiDBLite consensus disorder prediction 1 41 - -
Lele38g0975 222 Pfam Ribosomal protein S8e 5 199 IPR022309 -
Lele38g0975 222 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Lele38g0975 222 TIGRFAM eS8: ribosomal protein eS8 1 201 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0975 Lele-ChrLele38 21346650 21348813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0975 1 222 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.685 1.45e-127 357