Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0966 ATGGCGAAGCCGGGAGTGTTGGAATCTGATCCAACCGTGACGGCGAAGGCCATGGAGCTCAAGAAGGAGTTGCAGAGATTGGTGCAGTCAATTGTTGAAGATGAAGATTATTACGACATCGAGACCATTGATACGACCATGGAGGCGCTGTCGTTGCTGAAGCAGGTGAAGCTCAGCAAGAGATCGACGACGACGTCGTCTTCTTCGTCACTGTCTTTCACGCTTCGCAATAAAACCGGGTTGAGTTGCCCAGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACGTATGACAGAACGTTCATTCAAAAGTGGCTGAAAGCCGGGAACCGGACATGCCCTCGGACACAGCAAGTCCTTTCGCACACTGTTCTCACTCCGAATTACCTAATAAAGGAAATGATTGAGCAATGGTGTAGAAACCAAGGCATTGAATTTTCCAACCATGTTCACTTTATCAATGAGGAAGCTATCATAGAACCAGACCATGGTCATTTTCTTTCTTTGCTTGATAAAGTGTCTTCATCCGCAATTTCGGAACAGAAAGCCGCCGCGAAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTGTTTCAGGGTATTCTTCGGTGAGTTTTCGGGTGCCATTCCCAAATTTCTTAAACCAATCTGTGGTAGTCACTCTCTGGGTAATGTTCACCCTGACCTCCAAGAAGATGTTGTCACAACACTCCTTAATATCTCCATCCATGACAACAACAAGAAGCTAGTAGCAGAGACTCCCATGGTGATTCCTCTCCTCATGAGGGCATTGAGAAGAGGAACAATAGCAACACGAAGCAACGCCGCCGCCGCCCTTTTCACTTTGTCGGCTCTAGACTCAAACAAGGAGCTTATAGGGAAATCTGGAGCCTTGAAGCCTCTGATTGACCTTTTAGAAGAAGGGCATCCCTTAGTCATGAAAGATGTTGCATCAGCAATTTTTACCTTATGTGTCCTTCAAGAGAACAAGGCAAGAGCAGTGAAGGATGGCACAGTGAAGGTGATTGTAAAGAAGATCGTTGACCGGGTTTATGTCGACGAACTACTAGCCATTCTCGCGCTGCTCTCGAGTCACCAGAAGGCAATTCAGGACATGGGAGAGCTTGGAGCTGTTCCTAGCTTGTTGAGCTTAATCAGAGAGACCACTTGTGAACGAAACAAAGAGAATTGCATTGCAATCCTTCAGACTATTTGTCTGTATGACAGAACCAGGTTGAAGGAGATAAAGGAAGAAGAGAACAGACATAGAACAATCTCTGAGCTTGCACAAAATGGAACTTCAAGGGCTAAGAGAAAGGCTGCTGGAATTCTTGAGAGACTACACAGGGTTGTTAATATTACACACACCGCATAA 1407 0.4584 MAKPGVLESDPTVTAKAMELKKELQRLVQSIVEDEDYYDIETIDTTMEALSLLKQVKLSKRSTTTSSSSSLSFTLRNKTGLSCPEEFKCPLSKQLMRDPVIVASGQTYDRTFIQKWLKAGNRTCPRTQQVLSHTVLTPNYLIKEMIEQWCRNQGIEFSNHVHFINEEAIIEPDHGHFLSLLDKVSSSAISEQKAAAKELRILTKKMPCFRVFFGEFSGAIPKFLKPICGSHSLGNVHPDLQEDVVTTLLNISIHDNNKKLVAETPMVIPLLMRALRRGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLVMKDVASAIFTLCVLQENKARAVKDGTVKVIVKKIVDRVYVDELLAILALLSSHQKAIQDMGELGAVPSLLSLIRETTCERNKENCIAILQTICLYDRTRLKEIKEEENRHRTISELAQNGTSRAKRKAAGILERLHRVVNITHTA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0966 468 SMART Ubox_2 86 149 IPR003613 GO:0004842|GO:0016567
Lele38g0966 468 Gene3D - 165 463 IPR011989 -
Lele38g0966 468 ProSiteProfiles U-box domain profile. 82 156 IPR003613 GO:0004842|GO:0016567
Lele38g0966 468 CDD RING-Ubox_PUB 87 129 IPR045210 -
Lele38g0966 468 PANTHER U BOX DOMAIN-CONTAINING 19 457 - -
Lele38g0966 468 FunFam RING-type E3 ubiquitin transferase 82 156 - -
Lele38g0966 468 SUPERFAMILY ARM repeat 176 458 IPR016024 -
Lele38g0966 468 SMART arm_5 296 336 IPR000225 GO:0005515
Lele38g0966 468 SMART arm_5 376 417 IPR000225 GO:0005515
Lele38g0966 468 SMART arm_5 254 295 IPR000225 GO:0005515
Lele38g0966 468 SUPERFAMILY RING/U-box 81 159 - -
Lele38g0966 468 FunFam RING-type E3 ubiquitin transferase 167 464 - -
Lele38g0966 468 Pfam U-box domain 84 153 IPR003613 GO:0004842|GO:0016567
Lele38g0966 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0966 Lele-ChrLele38 21263324 21266794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0966 145 468 U-box Gene Family AT3G07360 61.515 5.63e-135 390