Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0965 ATGGTGACATACGGAGGTTCTTCGGCGTCTCACCAAGTGGAGCAACTGAGACTACTCGGAAACTCTTACTTCAATCAAGATCGTTTCGGGGCCGCCATCGATGTTTATACCCAGGCAATCACTCTACGCCCTAACGTCCCGGTTTATTGGACCAATCGTGCTCTGTGTCACCGTAAGCGCAATGACTGGGCTAGAGCAGAGGAAGATAGCCGGAGAGCCATTCAACTGGACAACAAGTCGGTTAAGGCCCATTATATTTTGGGACTTGCATTGCTGCAGAGACAAGAATATATCGAAGGGGTTAGAAAATTGGAGAAGGCTTTGGATCTCGGGAGAGGCACCAATCCTAATGGCTATATGGTAGAGGAGATCTGGCAGGAGATTGCAAAAGCAAAATATCTACAGTGGGAAGATGCATTTACCAAGAGATCATGGGAATTGCATCGTTTGAAAGAAGCTTGTGAGTGTGCTCTAAATGAAAAGCATTCTAAAATGGAAGGGTTTATAGATGAAGTTGAAGCTTTGCACTCACAAGAACTCAATGCTTTAGAAAGATTTTTCTCTGAAGCTGCAGAGGTCGACATGCCTACCGAGGTCCCAGATTACTTATGCTGTAGAATTACTCTCGATATTCTTCGAGATCCTGTAATTACTCCAAGTGGACATACATATGAGAGGGCAGCGATTCTTCAACACCTTGAGAGGAGTGAGTTTGATCCAATTACAAGGGAACCACTTGATGCATCACAGCTTGTATCAAACTTGGCGATAAAGGAAGCAGTTCAGGCATTCTTGGACAAACATGGTTGGGCTTACAAGAGGCAGAAAGATGATCGAGTTTCAAGTTAA 849 0.4452 MVTYGGSSASHQVEQLRLLGNSYFNQDRFGAAIDVYTQAITLRPNVPVYWTNRALCHRKRNDWARAEEDSRRAIQLDNKSVKAHYILGLALLQRQEYIEGVRKLEKALDLGRGTNPNGYMVEEIWQEIAKAKYLQWEDAFTKRSWELHRLKEACECALNEKHSKMEGFIDEVEALHSQELNALERFFSEAAEVDMPTEVPDYLCCRITLDILRDPVITPSGHTYERAAILQHLERSEFDPITREPLDASQLVSNLAIKEAVQAFLDKHGWAYKRQKDDRVSS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0965 282 SMART tpr_5 81 114 IPR019734 GO:0005515
Lele38g0965 282 SMART tpr_5 13 46 IPR019734 GO:0005515
Lele38g0965 282 SMART tpr_5 47 80 IPR019734 GO:0005515
Lele38g0965 282 Pfam Anaphase-promoting complex, cyclosome, subunit 3 48 106 - -
Lele38g0965 282 SUPERFAMILY TPR-like 13 117 IPR011990 GO:0005515
Lele38g0965 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 279 IPR013083 -
Lele38g0965 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 273 IPR045200 GO:0000209|GO:0061630
Lele38g0965 282 Gene3D Tetratricopeptide repeat domain 6 143 IPR011990 GO:0005515
Lele38g0965 282 ProSiteProfiles U-box domain profile. 198 271 IPR003613 GO:0004842|GO:0016567
Lele38g0965 282 Pfam Tetratricopeptide repeat 15 45 IPR013105 -
Lele38g0965 282 ProSiteProfiles TPR repeat profile. 13 46 IPR019734 GO:0005515
Lele38g0965 282 Pfam U-box domain 199 270 IPR003613 GO:0004842|GO:0016567
Lele38g0965 282 SUPERFAMILY RING/U-box 194 272 - -
Lele38g0965 282 SMART Ubox_2 202 264 IPR003613 GO:0004842|GO:0016567
Lele38g0965 282 CDD RING-Ubox_CHIP 199 264 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0965 Lele-ChrLele38 21258949 21261201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0965 9 273 U-box Gene Family AT3G07370 62.963 4.64e-125 356