Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0910 ATGGAAGAAAGAGCTTCACAGTTCCAAAGAAAACGCAAAAATCCTTCATTCTTCAAGGTTCTGATCAAAGATTTCTCTACTCGCTTGCGAATTCCATCCGCGTTTATTAACAATGTGTTTGGTAAAGACGTGCCAAAGAACGCAATTCTCGAGAATTATTATGGTAAATCTGAAGGAGTCGAGCTGGAAAAGCATGAGAATCGAATTTGTTTCTGTAAGCGATGGAGTAAATTTGTTGAGGACAATAAATTAGAGACTGGAGATTTCTTAGTATTTAAATATGTTTCAGATTATTCAAAGTTTAAGGTCAAAATCTATGGAAAATCTTGCTGCGAGAAAGAATATTCTGAACCTGGGAAAAACGAAGATGAGACAAATAATAATACCGTTGGAGAGGAACGAAAAAGAAAGAGGGAAGAAGAAGAAGAACATGATGGAGAATTGAAAGCTGCAAAAAGGATTGAGTCATCAGATTCTGATATTGGAGACGAAGATTCTGAAGATGAACCAATTAATATTGATTCTGAATCTTCTCATCTTCCTATTGTTGAAGAAAAAGAAGAAGTTGGTAATTCAAAGCAGCCAACAGGTGAAGAAAAGAGGAATGGAGAGGGCAAAAGATTGCATACTGATGCTAACCAAATAGAATTCGAATGTCAGAATCCTTCCTTCCAAGTCAAACTCAAATCTTCAAGTGTCAATAACTATCTGAATATACCATTAAGCTTTTCGAGGGAATATATAATAAGGAAGGAAAGGCAAAGGGAGGAGATCAAAATTGAGACGCCCAACAAAATGTGGGAAATGGGTCTTCTAGTGTTGTGGGCAGTAAGGAAGAAGAAGAAGAAGGAACTGGCGGGAACAAGACTGACTCAAGGATGGAGGAACTTAACATCAGAATATCGTCTCCAAATGGGAGATGCCTGCATCTTTGAATTGATCCAACCAACTCGTGACCTTGTCTTTCGTCTTCATGTTCGTCGACAGGATCCTCAAAATAACAAGTTCATTCATATACTTTAG 1023 0.3754 MEERASQFQRKRKNPSFFKVLIKDFSTRLRIPSAFINNVFGKDVPKNAILENYYGKSEGVELEKHENRICFCKRWSKFVEDNKLETGDFLVFKYVSDYSKFKVKIYGKSCCEKEYSEPGKNEDETNNNTVGEERKRKREEEEEHDGELKAAKRIESSDSDIGDEDSEDEPINIDSESSHLPIVEEKEEVGNSKQPTGEEKRNGEGKRLHTDANQIEFECQNPSFQVKLKSSSVNNYLNIPLSFSREYIIRKERQREEIKIETPNKMWEMGLLVLWAVRKKKKKELAGTRLTQGWRNLTSEYRLQMGDACIFELIQPTRDLVFRLHVRRQDPQNNKFIHIL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0910 340 MobiDBLite consensus disorder prediction 113 159 - -
Lele38g0910 340 CDD B3_DNA 15 106 IPR003340 GO:0003677
Lele38g0910 340 SUPERFAMILY DNA-binding pseudobarrel domain 217 328 IPR015300 -
Lele38g0910 340 SMART B3_2 17 109 IPR003340 GO:0003677
Lele38g0910 340 SMART B3_2 224 328 IPR003340 GO:0003677
Lele38g0910 340 PANTHER B3 DOMAIN-CONTAINING 11 316 - -
Lele38g0910 340 SUPERFAMILY DNA-binding pseudobarrel domain 12 116 IPR015300 -
Lele38g0910 340 MobiDBLite consensus disorder prediction 179 207 - -
Lele38g0910 340 MobiDBLite consensus disorder prediction 113 207 - -
Lele38g0910 340 ProSiteProfiles B3 DNA-binding domain profile. 14 109 IPR003340 GO:0003677
Lele38g0910 340 ProSiteProfiles B3 DNA-binding domain profile. 222 330 IPR003340 GO:0003677
Lele38g0910 340 Pfam B3 DNA binding domain 17 107 IPR003340 GO:0003677
Lele38g0910 340 Pfam B3 DNA binding domain 225 329 IPR003340 GO:0003677
Lele38g0910 340 CDD B3_DNA 222 328 IPR003340 GO:0003677
Lele38g0910 340 Gene3D - 8 111 IPR015300 -
Lele38g0910 340 Gene3D - 203 330 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0910 Lele-ChrLele38 20806155 20809361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0910 13 327 B3 DNA Binding Superfamily AT5G66980 26.923 3.72e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele38g0910 B3 6e-11 CL0405