Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0901 ATGGTACGTATCTCTCTGAGTTTGCGTGATTGTGTTGTTGATTCTGGAGGAATGTGCATTTTGTACCGTCTTTTCTGTGAAAATGTGGACTTCTATGTTTTGGCAGCGTATGTTAAGGCTCAAAAATCAAAGGCGTACTTCAAGAGATATCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAAAACTGATTACCGAGCTAGGATTCGGTTGATCAATCAGGACAAGAACAAATACAACACTCCCAAATATCGCTTTGTTGTTCGATTTACAAACAAAGATATTATTGCACAAATAACATCCGCTAGTATTGCTGGTGATATTGTTCTTGCTGCTGCATATGGACATGAGTTGCCACGCTATGGCCTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGAGTCCTTAAGATGCTTGAAATGGAAGAGGAGTATGAGGGCAATGTAGAGGCTTCAGGAGAGGACTTTTCTGTCGAACCTTCTGATACTAGGAGGCCTTTCCGTGCTTTACTTGATGTTGGTCTTATTAGGACTACAACTGGCAATCGCGTCTTTGGTGCCCTTAAGGGAGCATTGGATGGGGGATTAGATATTCCTCACAGCGACAAAAGATTTGCTGGTTTTAATAAGGATAAGAAAGAGCTTGATCCTGAGGTTCATCGCAGATATATCTTCGGTGGTCATGTTGCTGCATATATGAAGACTTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTTAGTGAATATCTCAAGCGAGGATTGGAGGCTGATGGACTAGAGGAGATGTACAAAAAGGTTCATGCTGCCATTCGTGCCGACCCCACAGTGAAGAAGTCTGAGAAGGTGGAGCCACCAAAGGAACACAAGAGGTACAACTTGAAGAAACTTACATACGAGGAGAGAAAGGCTAAGTTGGTTGCGCGTTTGCAGGCTCTCAACTCTGCGGTTGATGGTGCCGAAGACGATGAGGATGACGAGTAA 1011 0.4352 MVRISLSLRDCVVDSGGMCILYRLFCENVDFYVLAAYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAAAYGHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMEEEYEGNVEASGEDFSVEPSDTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKDKKELDPEVHRRYIFGGHVAAYMKTLAEDEPEKYQSHFSEYLKRGLEADGLEEMYKKVHAAIRADPTVKKSEKVEPPKEHKRYNLKKLTYEERKAKLVARLQALNSAVDGAEDDEDDE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0901 336 Hamap 50S ribosomal protein L18 [rplR]. 48 280 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 Coils Coil 312 332 - -
Lele38g0901 336 FunFam 60S ribosomal protein L5 35 326 - -
Lele38g0901 336 CDD Ribosomal_L18_L5e 75 204 - -
Lele38g0901 336 PANTHER RIBOSOMAL PROTEIN L5-RELATED 36 325 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 Pfam Ribosomal L18 C-terminal region 269 323 IPR025607 -
Lele38g0901 336 PRINTS Ribosomal protein L5 signature 54 73 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 PRINTS Ribosomal protein L5 signature 240 260 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 PRINTS Ribosomal protein L5 signature 118 138 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 PRINTS Ribosomal protein L5 signature 198 217 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 PRINTS Ribosomal protein L5 signature 178 197 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 PRINTS Ribosomal protein L5 signature 77 96 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 48 209 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele38g0901 336 Gene3D - 35 326 - -
Lele38g0901 336 SUPERFAMILY Translational machinery components 45 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0901 Lele-ChrLele38 20720385 20722971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0901 37 325 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.007 9.91e-180 497