Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0875 ATGGCGGGGAAAGATGATGGCTTGGGCTTGGGTTTGAATCTGAGCTTGGGACTGGGAATGAATCCGTCTCCTTCTTTGAAGGAAAGTCTCATGCAGAAGAAACCTTCTCGGACTCTTCCGAATCAAAGAGCTTCCTGGAACGATATTTTCCAGCTACCTGATCGGAGCTGCGAGGCGAGAACGATGCTCCGGGGAGTGGATGTAAATTTAGCGCCGCCGCCGTCAACAACGGTGGTGGACTGTGATGACGAAAATGGCGTCTCCTCACCGAACAGTACTGTGTCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGTCTATTGGCGGCGAGCATGAAGCAGAGCGTGCTTCGTGTTCTCGAGGGAGCGACGATGATGACGGCGGCAGAGAGGGAGACGGAGATGGAGACGGCGACGGCGACGGCGATGCCTCGAGGAAGAAGCTCCGGCTGTCGAAGGAACAATCGCTTTTGCTTGAGGAAAAGTTCAAGGAGCACAATACCCTCAATCTGAAGCAAAAACAGGAATTGGCAAAACAGCTGAATCTGAGGCCGAGACAAGTGGAAGTGTGGTTTCAGAACAGGAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTATTTGAGGAGATGTTGTGAGACTTTGACTGAAGAGAATAGGAGGCTGCAAAAGGAAGTTCAAGAGCTTAGGGCACTAAAACTTTCCCCACAATTCTACATGCACATGAATCCTCCCACCACTCTCACAATGTGCCCTTCGTGCGAGCGCGTCGCCGTCTCCTCTGCATCCTCCTCCTCATCAGCAGCTGCCGGAACTCCTCCCGCCCCATCGAGCTCTAGCATTCAGAGGCCGGTGCCCCTCCTCCCCTGGGCGGCGGCTAACTCGAATTGGAACCGCCCCACCGACAGCTTAAATCCCCGCCCGTAA 933 0.5423 MAGKDDGLGLGLNLSLGLGMNPSPSLKESLMQKKPSRTLPNQRASWNDIFQLPDRSCEARTMLRGVDVNLAPPPSTTVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDDGGREGDGDGDGDGDGDASRKKLRLSKEQSLLLEEKFKEHNTLNLKQKQELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPQFYMHMNPPTTLTMCPSCERVAVSSASSSSSAAAGTPPAPSSSSIQRPVPLLPWAAANSNWNRPTDSLNPRP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0875 310 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Lele38g0875 310 CDD homeodomain 145 202 IPR001356 GO:0003677
Lele38g0875 310 MobiDBLite consensus disorder prediction 65 146 - -
Lele38g0875 310 Coils Coil 207 237 - -
Lele38g0875 310 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Lele38g0875 310 MobiDBLite consensus disorder prediction 81 102 - -
Lele38g0875 310 MobiDBLite consensus disorder prediction 264 285 - -
Lele38g0875 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 274 - -
Lele38g0875 310 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Lele38g0875 310 MobiDBLite consensus disorder prediction 18 47 - -
Lele38g0875 310 SUPERFAMILY Homeodomain-like 132 202 IPR009057 -
Lele38g0875 310 SMART HOX_1 143 205 IPR001356 GO:0003677
Lele38g0875 310 MobiDBLite consensus disorder prediction 1 47 - -
Lele38g0875 310 MobiDBLite consensus disorder prediction 103 127 - -
Lele38g0875 310 FunFam Homeobox-leucine zipper protein 18 130 206 - -
Lele38g0875 310 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Lele38g0875 310 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Lele38g0875 310 Gene3D - 131 204 - -
Lele38g0875 310 Pfam HD-ZIP protein N terminus 1 105 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0875 Lele-ChrLele38 20456536 20458533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0875 45 294 Homeobox Transcription Factor Family AT3G60390 63.740 1.37e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele38g0875 HD-ZIP_N 8.9e-30 No_clan