Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0861 ATGAACCCCAATAATCTTTCTCCTTTAGATTCAGTTAAGCAATACCTTCTTCAAGATGATCCTTCCTCTATGATTCTCATGAATGTCTTCTTCATGCGGAATAATAACAACCCTACTTTTAACCCTAGCTGCGGAGTTTCTTATCCGGAGCAGGGGGCTATTAACTCCAGTGGCATGGCGTTTTCTGGCGGTGAGCATGACAGCACAGCGAAACCTCCTGCAGGTGATGACGATAGGTTTAATGATGCTAACAGCAATGCAGGCGGATCTGTGGCGCGTGAAGGGAACGCGCCACCAAGATGGAGGACCTACCGAGGTGTGAGGCGGCGGCCATGGGGGAAGTTCGCGGCTGAGATCCGGGACCCAAAGAAGAACGGGGCGAGGATATGGTTGGGAACTTATGAGAGGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGTAGAAAAGCTAAGCTGAATTTTCCACACCTCATTGGGTCGGAACCACTACCAGAGTCGGCGAGAGTAGTCGCTGGACAGAAGCGGCGGCCCTCACTGGAACCATCATCGCCATCTGAGGATGATGGGTCTCAGGGGTCAAGTAATAAGAGGAAGAACTTGCCTGGTCTATTGAATAGGTTAGCAACAAATGGAAATCTAAGCCACAAGCTTGAAATGGTATTCATGAAGGCATAG 693 0.4964 MNPNNLSPLDSVKQYLLQDDPSSMILMNVFFMRNNNNPTFNPSCGVSYPEQGAINSSGMAFSGGEHDSTAKPPAGDDDRFNDANSNAGGSVAREGNAPPRWRTYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYEREEDAALAYDRAAFKMRGRKAKLNFPHLIGSEPLPESARVVAGQKRRPSLEPSSPSEDDGSQGSSNKRKNLPGLLNRLATNGNLSHKLEMVFMKA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0861 230 FunFam Ethylene-responsive transcription factor 2 102 162 - -
Lele38g0861 230 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Lele38g0861 230 MobiDBLite consensus disorder prediction 171 208 - -
Lele38g0861 230 PANTHER DNA-BINDING DOMAIN 77 196 IPR044808 GO:0003700|GO:0009873
Lele38g0861 230 MobiDBLite consensus disorder prediction 189 208 - -
Lele38g0861 230 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Lele38g0861 230 SUPERFAMILY DNA-binding domain 103 162 IPR016177 GO:0003677
Lele38g0861 230 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Lele38g0861 230 MobiDBLite consensus disorder prediction 57 104 - -
Lele38g0861 230 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Lele38g0861 230 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Lele38g0861 230 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Lele38g0861 230 PRINTS Ethylene responsive element binding protein signature 143 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0861 Lele-ChrLele38 20292702 20293394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0861 83 188 AP2-EREBP Transcription Factor Family AT2G44840 63.889 1.08e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele38g0861 AP2 2.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0861 38 20292702 20293394 Lele38g0861 38 20292702 20293394 ECH
Lele38g0861 38 20292702 20293394 Lele39g0471 39 3779788 3780414 hybridization
Lele38g0861 38 20292702 20293394 Lele40g0820 40 18640363 18641055 hybridization