Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0860 ATGATGAACCCTAATTTCGAATCAATTCAACAATACCTGATTGAAGAAGATCCTTCTTCCATGACTCTCTTGAATGGCTTCTTCATCGCAGACAACCCTACTTTGAATCTGAACTTTGTCGACGCTGCTTTGCCGGAGCATGGTGTTAGTAACTCCGGTGGTACGGTGCTTTCCGGCTTGAATGATGACAAATACGCTATGAATCCAGGTGGTTGTTATGATGATAGGGTTAATGGCAATAACAACACAGGATCTGTAGTGGCGTGTGAAAAGAACGCACCACCAAGATGGAGGAATTACCGAGGCGTGAGGCGGCGGCCATGGGGGAAGTTTGCGGCTGAAATTCGGGACCCGAACAGGAATGGCGCGAGGACATGGTTGGGAACCTATGAAACGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAAAGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATTGGATCGGAACCACTGCCGGAGCTGACAAGAGTAGTTACCGGACAGAAGCGGCGCCGCCCTCTGGAAGAAAAGCCATCAGGCTGGTCTACCGAATAA 576 0.4878 MMNPNFESIQQYLIEEDPSSMTLLNGFFIADNPTLNLNFVDAALPEHGVSNSGGTVLSGLNDDKYAMNPGGCYDDRVNGNNNTGSVVACEKNAPPRWRNYRGVRRRPWGKFAAEIRDPNRNGARTWLGTYETEEDAALAYDRAAFKMKGRKAKLNFPHLIGSEPLPELTRVVTGQKRRRPLEEKPSGWSTE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0860 191 SMART rav1_2 99 163 IPR001471 GO:0003700|GO:0006355
Lele38g0860 191 Pfam AP2 domain 99 149 IPR001471 GO:0003700|GO:0006355
Lele38g0860 191 SUPERFAMILY DNA-binding domain 99 158 IPR016177 GO:0003677
Lele38g0860 191 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Lele38g0860 191 CDD AP2 99 159 IPR001471 GO:0003700|GO:0006355
Lele38g0860 191 FunFam Ethylene-responsive transcription factor 2 98 158 - -
Lele38g0860 191 PRINTS Ethylene responsive element binding protein signature 139 159 IPR001471 GO:0003700|GO:0006355
Lele38g0860 191 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Lele38g0860 191 PANTHER DNA-BINDING DOMAIN 84 169 IPR044808 GO:0003700|GO:0009873
Lele38g0860 191 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0860 Lele-ChrLele38 20287430 20288005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0860 99 178 AP2-EREBP Transcription Factor Family AT2G44840 62.366 1.45e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele38g0860 AP2 5.1e-14 CL0081