LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele38g0859	ATGATCCCTAACAACAATCTTTCTTCTTTCAAATCATCATCAGTTCAGCAATACGATCATGATCCTTCTTCATCAACGACGACTCTCATGATGATGAATAGAGTCTTCTTCACTTCAAACACTAACTGCGACACTGCTTCTTCGCTTGAGCAGTCTCTGAGTAACTCCAGTGGCACGGCATTTTCCGTCGAGCATGAAGATCACACCATGAAACCAGGTGGTGGTGATAGGGCTAATAACAATAATCTTAGTAATGTGGAATCTGAATCTGTGGGGCGTGAGGTGAACGCGCCACCTAGATGGAGGAATTACCGCGGCGTGAGGCGTCGGCCGTGGGGGAAGTTCGCTGCAGAGATCCGGGACCCGAAGAGGAACGGCGCGAGAACTTGGCTGGGGACATATGAGACTGAGGAGGATGCAGCTTTTGCTTATGATAGAGCTGCTTTCAAGATGAGGGGAAGAAAAGCCAAGCTCAATTTTCCACACCTTATTGGGTCGGAATCGGACCCACCGCCGGAGCCGGTTGACAAGAAGCGGTGCCACTCGCCAGAACCTTCATCATCGTCAGGGTGTGCATCTGAGGATAGCGGATCTCAAGTGTCAAGTAAGAAGAAGAACCTCACTAGTCTATTGAACAAGTTAGCGACAAATAGAAGCCAAGTCAGAGGCTGGAAATAA	678	0.4882	MIPNNNLSSFKSSSVQQYDHDPSSSTTTLMMMNRVFFTSNTNCDTASSLEQSLSNSSGTAFSVEHEDHTMKPGGGDRANNNNLSNVESESVGREVNAPPRWRNYRGVRRRPWGKFAAEIRDPKRNGARTWLGTYETEEDAAFAYDRAAFKMRGRKAKLNFPHLIGSESDPPPEPVDKKRCHSPEPSSSSGCASEDSGSQVSSKKKNLTSLLNKLATNRSQVRGWK	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele38g0859	225	FunFam	Ethylene-responsive transcription factor 2	102	162	-	-
	Lele38g0859	225	SUPERFAMILY	DNA-binding domain	103	162	IPR016177	GO:0003677
	Lele38g0859	225	Gene3D	AP2/ERF domain	102	162	IPR036955	GO:0003700\|GO:0006355
	Lele38g0859	225	MobiDBLite	consensus disorder prediction	75	91	-	-
	Lele38g0859	225	MobiDBLite	consensus disorder prediction	161	225	-	-
	Lele38g0859	225	MobiDBLite	consensus disorder prediction	46	63	-	-
	Lele38g0859	225	SMART	rav1_2	103	167	IPR001471	GO:0003700\|GO:0006355
	Lele38g0859	225	MobiDBLite	consensus disorder prediction	184	225	-	-
	Lele38g0859	225	PRINTS	Ethylene responsive element binding protein signature	104	115	IPR001471	GO:0003700\|GO:0006355
	Lele38g0859	225	PRINTS	Ethylene responsive element binding protein signature	143	163	IPR001471	GO:0003700\|GO:0006355
	Lele38g0859	225	ProSiteProfiles	AP2/ERF domain profile.	103	161	IPR001471	GO:0003700\|GO:0006355
	Lele38g0859	225	CDD	AP2	103	163	IPR001471	GO:0003700\|GO:0006355
	Lele38g0859	225	MobiDBLite	consensus disorder prediction	46	94	-	-
	Lele38g0859	225	MobiDBLite	consensus disorder prediction	1	26	-	-
	Lele38g0859	225	Pfam	AP2 domain	103	153	IPR001471	GO:0003700\|GO:0006355
	Lele38g0859	225	PANTHER	DNA-BINDING DOMAIN	54	202	IPR044808	GO:0003700\|GO:0009873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele38g0859	Lele-ChrLele38	20280664	20281341	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele38g0859	104	194	AP2-EREBP Transcription Factor Family	AT2G44840	73.913	2.37e-39	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele38g0859		AP2	1.3e-12	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele38g0859	38	20280664	20281341	Lele38g0859	38	20280664	20281341	ECH
	Lele38g0859	38	20280664	20281341	Lele39g0477	39	3822464	3823048	hybridization
	Lele38g0859	38	20280664	20281341	Lele40g0818	40	18629107	18629787	hybridization