Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0816 ATGACCAAAAGAACCAAGAAGGCCGGTATTGTTGGTAAATATGGCACCCGATATGGTGCTAGTCTTAGGAAGCAAATTAAGAAGATGGAAGTAAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGGAAGTATGCTGTTAAGAGAAAGGCTGTCGGTATATGGGGCTGCAAAGATTGTGGAAAAGTGAAAGCGGGAGGTGCTTACACATTGAACACTGCAAGTGCGGTGACAGTCCGTAGCACCATAAGGAGGTTGAGAGAGCAGACTGAGAGTTAA 279 0.4516 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0816 92 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 4 72 IPR002674 GO:0003735|GO:0005840|GO:0006412
Lele38g0816 92 SUPERFAMILY Zn-binding ribosomal proteins 10 82 IPR011332 GO:0006412
Lele38g0816 92 TIGRFAM eL43_euk_arch: ribosomal protein eL43 1 91 IPR002674 GO:0003735|GO:0005840|GO:0006412
Lele38g0816 92 PANTHER ZGC:171772 1 92 - -
Lele38g0816 92 Pfam Ribosomal L37ae protein family 4 88 IPR002674 GO:0003735|GO:0005840|GO:0006412
Lele38g0816 92 Gene3D - 1 92 IPR011331 GO:0003735|GO:0005840|GO:0006412
Lele38g0816 92 FunFam 60S ribosomal protein L37a 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0816 Lele-ChrLele38 19884394 19886284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0816 1 92 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 94.565 2.97e-60 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0816 38 19884394 19886284 Lele39g0526 39 4549218 4551043 hybridization
Lele38g0816 38 19884394 19886284 Lele40g0762 40 17896291 17901053 hybridization