LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele38g0812	ATGTTCCGACGCGCCACTACTTTGCTGGGTCGTCCCATTCTCGCCGCCAGGTCCCGCCTTTTCTCGAGCGATCTCCCCGCCACTCCCGCCGCTGATTCCCAGTTCGTTGAGGCATGGAAGAAGGTCGCTCCTAACATGGACCCACCCAAGACTCCTCTTGCGTTCATGTCCCCTCGCCCTCCTACGCCCTCCTCGATCCCATCCAAGCTCACTGTCAATTTCGTGCTTCCTTACTCTTCGGAATTGTCCGCTAAAGAGGTTGACATGGTCATAGTACCAGCAACAACTGGACAAATGGGTGTTCTTCCAGGACATGTGGCTACAATTGCAGAGTTGAAACCTGGGGTTTTATCTGTGCATGAAGGGAACGATGTGACCAAGTACTTTGTGAGTAGTGGCTTTGCTTTCATCCATGCAAACTCTGTTGCTGACATAATAGCTGTTGAGGCCGTGCCTGTTGATCGAATTGATGGCAACCTAGTCCAAAAGGGTCTCCAAGAATTCACTCAGAAGCTGAGCTCTGCGACGACTGATTTGGAGAAAGCCGAAGCCCAGATCGGGATTGATGTCCATAGTGCACTAAATGCAGCTCTTTCAGGCTGA	603	0.5174	MFRRATTLLGRPILAARSRLFSSDLPATPAADSQFVEAWKKVAPNMDPPKTPLAFMSPRPPTPSSIPSKLTVNFVLPYSSELSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADIIAVEAVPVDRIDGNLVQKGLQEFTQKLSSATTDLEKAEAQIGIDVHSALNAALSG	200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele38g0812	200	Hamap	ATP synthase epsilon chain [atpC].	68	188	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Lele38g0812	200	Coils	Coil	165	185	-	-
	Lele38g0812	200	FunFam	ATP synthase delta	59	156	-	-
	Lele38g0812	200	Gene3D	-	157	199	-	-
	Lele38g0812	200	SUPERFAMILY	Epsilon subunit of F1F0-ATP synthase N-terminal domain	70	151	IPR036771	-
	Lele38g0812	200	CDD	F1-ATPase_delta	70	193	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Lele38g0812	200	TIGRFAM	ATP_synt_epsi: ATP synthase F1, epsilon subunit	82	188	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Lele38g0812	200	Pfam	ATP synthase, Delta/Epsilon chain, beta-sandwich domain	70	142	IPR020546	GO:0015986
	Lele38g0812	200	Gene3D	-	60	156	IPR036771	-
	Lele38g0812	200	PANTHER	ATP SYNTHASE DELTA/EPSILON CHAIN	31	199	IPR001469	GO:0015986\|GO:0045261\|GO:0046933

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele38g0812	Lele-ChrLele38	19814900	19820542	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele38g0812	1	200	Primary Pumps ATPases	AT5G47030	75.610	2.15e-111	315

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele38g0812	38	19814900	19820542	Lele38g0812	38	19814900	19820542	ECH
	Lele38g0812	38	19814900	19820542	Lele39g0532	39	4642393	4646441	hybridization
	Lele38g0812	38	19814900	19820542	Lele40g0755	40	17810978	17815367	hybridization