Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0811 ATGAAATCCATACCAGACTGGCCTAGTCAATCTGAAAATGGAGAAATTCGAGCAAGGCATGCCACTTCCTCAGGCATTTACTTTTACTTCCCCTTCCCAAATTCATTTCCACGCCTTCCCACCTACTTCACCTTCATCTTCATCCCTCACGTGATCCTCACGTGCTCTTCCCCCTACCTCCATTTATATACCCCATTCTTTATCATTTCCCTCCTCTCCTCTCCCTGTTACGTTTCTCTCTCCCACCCTCTCTCGTGTCCCGCCATGGCTTCTCCGCCTTCTTACACCCTAAACGTCGTCGGGACATATCCTACCTCCTTCACCGAGACTTCTACTTCTGAGGATCGTGTTTCTTCTCAGCACTTCTCTGCTTTCCAGAATCTCAACACCAGTGTTCTCATTATTGTTATCGTCCTTTCTGTTACTATCATTGTGTCGCTCTCTCTCTGCTTGCTTCTTCGTCATCTCAATCTCCGGTGCCTCCGTCGGCTTTCTCCTTCGTCGTTGTCGTTGTCGTCGTCGTTCAGGAGGAATGCCACGCCGGCGACTGCGACTGCGACTGCTACTACGACGCCTGGTTACTCTTCCAGTCGTCGCGTCTCGCCGGAGATTCCCTCGGCTTCAATTATTGATTCGCTTCCGATTTTCACTTTTTCTTCCATTACTCGTCGGTCTTCTGCCTCTGATACTACCGGCGGAGATTGTGCAGTTTGCCTCTCGAAATTTGAGCAGAGAGACCTCCTCCGTCTTCTCCCGTTGTGTTGTCATGCCTTTCATGTGGAATGCATCGATACTTGGCTTCAGGCAAATTTGACTTGTCCGTTGTGCCGATCTGCGATTTTTGCTTCTGATTCGGACTTAATGAAGGTTCTCCGATCGTCTTCCGGCGGGGGTGGAGGCAGCGATAGTTTCCGGCTCGAAATTGGAAACATTAGCCGGCGGGGAACGGCGCCACCAGACGTCGCTGGAGACGCGCGTGCGAGGTCGAGGTCGAGGTCCTATTCGGTTGGCTCGTTTGAGTATTTTGTAGAGGAGGATTCCGAGGTTCCTATCAGCCACGCGCATCGGAGGAGCGTGTCGGATAACAAGGATGAATCGGTAGTTGCAGACTCTCCACCACCGGTGGCGGCTCAGTCGGTCTATGAGGCGAGCTTAGCCGCCGATGTAGCCAGCAGTGGGAGGAGCTGGCTGAAGGATTACGTGGATAGGCTCTCATCGTCTATATCATCCCGAACAGTATCATTTCGAGGTTCTGGAAGGTTCTTTACAGGCGGTAATGCTAGCCACCGAAGCGACGCCGCCATCTCAGCGGAGGACTGCGACATTGAAGCAATCAGATTAGGCGAAGAAATTAGCGAAACTTTTCGATGGCTCTCAGGGGTATGA 1386 0.518 MKSIPDWPSQSENGEIRARHATSSGIYFYFPFPNSFPRLPTYFTFIFIPHVILTCSSPYLHLYTPFFIISLLSSPCYVSLSHPLSCPAMASPPSYTLNVVGTYPTSFTETSTSEDRVSSQHFSAFQNLNTSVLIIVIVLSVTIIVSLSLCLLLRHLNLRCLRRLSPSSLSLSSSFRRNATPATATATATTTPGYSSSRRVSPEIPSASIIDSLPIFTFSSITRRSSASDTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLQANLTCPLCRSAIFASDSDLMKVLRSSSGGGGGSDSFRLEIGNISRRGTAPPDVAGDARARSRSRSYSVGSFEYFVEEDSEVPISHAHRRSVSDNKDESVVADSPPPVAAQSVYEASLAADVASSGRSWLKDYVDRLSSSISSRTVSFRGSGRFFTGGNASHRSDAAISAEDCDIEAIRLGEEISETFRWLSGV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0811 461 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Lele38g0811 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Lele38g0811 461 SUPERFAMILY RING/U-box 210 283 - -
Lele38g0811 461 FunFam E3 ubiquitin-protein ligase ATL6 195 283 - -
Lele38g0811 461 Pfam Ring finger domain 234 277 IPR001841 -
Lele38g0811 461 SMART ring_2 235 276 IPR001841 -
Lele38g0811 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 127 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0811 Lele-ChrLele38 19793088 19795205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0811 208 284 C3H Transcription Factor Family AT5G05810 51.948 2.14e-20 91.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0811 38 19793088 19795205 Lele39g0533 39 4657591 4658898 hybridization
Lele38g0811 38 19793088 19795205 Lele40g0754 40 17787782 17790020 hybridization