Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0758 ATGGGGAGCATGGGTGAACCGGACAGAAAACGGCGTCACTTTAGCTCCTTGTCCCCTACAGCTGCAGCTACAACGGCCAAGAAGCTACCCTTCTTACCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTTCTTCAGTTTCAAAATCAAAAGCTTACACAGAAATTAGAAACTCAGAAGTTAGAATATACTGCGGTTGAGAATAAATTTTTCCAACTAAAGGATAGGCAACATTCATATGATTCCATGTTAACGGTGGTCAAGAAGTCCTGGGAACAGGTAATTGATGATTTGGTGTCATGTTCTGATCAAACGGTTGAGTCTAGCAGCAGCAAATTGCATACAAACGTTAGATCAGTCACAGGTGCTGGTAGTCGATCCACTGTTGAGGATGATCTTCTTAGTCGACTGGAGCAAACTGGTGCAACTGAAAGTTCCTCCACATATGGTTGGGTCAACCAGATGGAAGAGCAGAGAGAAGTTACTGTTGAAAAAGCTAAGAACATTATGCAAAATATTGTGGCAGCTATCAATAATGTTTGGTGTCTGAAAGATGGATTACATGCTGCAGTTTTAACAAAACTTCCAGGAGATGGTATGTGTGGGCAGAAGTCCTCCATTGATCTAAATATGGAAATTAAAACCTTGAGATCTGCATTTACTGAGCTTCATTTAAAGCACAAGTCTTTGGCTAGTGAGTTCCGAAGTCATCGAGATCTTGATACCAAAAATAAAGTTGAGCTTAAAAGATTGAAAGGGGAACTGGCAAGCATTGTTGCAGAACTAGAAGAAAGTAATCACAAACTGGCAACTCTTAAGGCAGAGAGAGATGCGGCAAAAGGGGCAGTTTTTCCTGTCTTAAATGTCGGAACTAAGCATGCTGCTAGTGATATCAGAGACAAGCAAAAGGATTTGCATGAGATGGAATCTTCTTTGAAGGAGATATTGGACCAAGGATCCTCCAGGCTAATGGAACTGAAAAATCTTCATGAGGAAAGAATAAGAATATTACAACAAATATGTGATTTACAAAACACTCTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCATTCCAACTGGCAAGAGATCAGATAGAACAATCAAAAGTAGAAGTTCTTGAGTATCAGATCTTATTCGAGAAACTACAGGTTGAGAAGGACAATCTTGCTTGGAGGGAGAGAGAGTGGTACATAAAGAGTGATTTGGTAGATGTTTTTCAAAGGTCTATGTCAGTTGCTGAATCTAAAGTGGCTGATTTAGGGACTAAAATAAAGAAGAAAATTGAGGAGAGAAGTGCGATAGAAAATAAACTGCAAGAAGCGGCAAGGGAACCAGGAAGGAAGCAAATTATTGCAGATTTTAAATCCCTGCTTTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTAAATTAAGTAAGTATAAAGAAGCAGCTTCAGACATTCATTCTCTACGTGCAGATGTACAGTCCCTCTCTAGTATTCTTGAGAGGAAGGTAAAGCAATGTGATGTTTTATCTCATAAATCTGCTGATCAGCTGGCTGAGATACGGAGCCTGCTTGCTGTGGTCGATGATTTGAGAGAAAGTGAGCTAGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAGTCCATTGATTCAAGGGATGTTGTGGAGGCACGGGATTCAGAATACAAAGCATGGGCCCAGGTTCAAAGTTTGAAATCTTCTCTTGATGAACACAACCTAGAGCTTCGAGTTAAGACAGCAAATGAGGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAAGCTGAGATAGTGGACTTGAGACAGACATTAGATGTTTCAAAAAGGGAGAAGGGCAAACTCTCTGATGTCTTGAAATCAAAAAGTGAGGAAATTGAAGCATACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACCCAAAACCAACATCTGTTGCACCAGATTACTGAAAGAGATGACTACAATATCAAGCTTGTCCTAGAGGGCGTGAGGGCAAGACAAAAACAGGAATCTTTAATCGTGGAGAAGCAGGCCATTGAACGGGAGATCCAGCAATCAAATGCATCTCTTAATTTTTATGACATGAAAGCTGCTAGGATTGATAACCAGTTAAAGTTGTGTTCAGATCAGTGTCACAGACTTGAGGAGGATAAGGTTCAAAGTTCTGTTACATTGGAAAATACACAAAGGAGGTTGTTGGATGTCAGAAGATCATCTCAACAAGCCAGAGAAGCTGTGGAGAAAGTGCAATCGAAAGTTGGTATTAATCGAGTAACTTGCATGGAGTTACAAGTGGACCTAGAGAAAGAAAGGTTTTCCAGGAGACGATTAGAGCAGGAGCTGGAGGTTGCTAGGAGAAAGGTTTCTTATCTTCAGGCGCAGATTGAGGGCTCCTCTGTTATTGAAAAGCTTCAGCAGGAACTAGGAGAATACCGGGAAATTGTTAAGTGCAGTGTCTGCCAAGACAGGACAAAAGAGGTTGTAATTACAAAATGCTATCACTTGGTCTGCAATCCATGTATCCAGAAAGTTGTTGAGAGTAAGCAACGCAAGTGTCCATTATGTGCTGCAAGCTTTGGGCCTAATGATGTGAAGCCCATTTATTTGTAA 2643 0.4056 MGSMGEPDRKRRHFSSLSPTAAATTAKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKLEYTAVENKFFQLKDRQHSYDSMLTVVKKSWEQVIDDLVSCSDQTVESSSSKLHTNVRSVTGAGSRSTVEDDLLSRLEQTGATESSSTYGWVNQMEEQREVTVEKAKNIMQNIVAAINNVWCLKDGLHAAVLTKLPGDGMCGQKSSIDLNMEIKTLRSAFTELHLKHKSLASEFRSHRDLDTKNKVELKRLKGELASIVAELEESNHKLATLKAERDAAKGAVFPVLNVGTKHAASDIRDKQKDLHEMESSLKEILDQGSSRLMELKNLHEERIRILQQICDLQNTLKNLKCITSSHAFQLARDQIEQSKVEVLEYQILFEKLQVEKDNLAWREREWYIKSDLVDVFQRSMSVAESKVADLGTKIKKKIEERSAIENKLQEAAREPGRKQIIADFKSLLSSFPEEMGSMQSKLSKYKEAASDIHSLRADVQSLSSILERKVKQCDVLSHKSADQLAEIRSLLAVVDDLRESELELKLILEMYRRESIDSRDVVEARDSEYKAWAQVQSLKSSLDEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQTLDVSKREKGKLSDVLKSKSEEIEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQESLIVEKQAIEREIQQSNASLNFYDMKAARIDNQLKLCSDQCHRLEEDKVQSSVTLENTQRRLLDVRRSSQQAREAVEKVQSKVGINRVTCMELQVDLEKERFSRRRLEQELEVARRKVSYLQAQIEGSSVIEKLQQELGEYREIVKCSVCQDRTKEVVITKCYHLVCNPCIQKVVESKQRKCPLCAASFGPNDVKPIYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0758 880 Pfam Zinc finger, C3HC4 type (RING finger) 826 868 - -
Lele38g0758 880 CDD RING-HC_BRE1_like 826 867 - -
Lele38g0758 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Lele38g0758 880 Coils Coil 42 69 - -
Lele38g0758 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Lele38g0758 880 Coils Coil 425 445 - -
Lele38g0758 880 Coils Coil 736 756 - -
Lele38g0758 880 Coils Coil 771 805 - -
Lele38g0758 880 Coils Coil 582 616 - -
Lele38g0758 880 Coils Coil 708 728 - -
Lele38g0758 880 Coils Coil 298 318 - -
Lele38g0758 880 Coils Coil 248 282 - -
Lele38g0758 880 SMART ring_2 828 866 IPR001841 -
Lele38g0758 880 SUPERFAMILY RING/U-box 820 879 - -
Lele38g0758 880 Coils Coil 152 172 - -
Lele38g0758 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Lele38g0758 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0758 Lele-ChrLele38 19001542 19015903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0758 808 879 C3H Transcription Factor Family AT3G58030 32.895 3.37e-08 55.1