Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0754 ATGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGCCAGTTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGTTGGGTTTCAGAGATTGTTAAATTTTCACCCAAACTAAAATTGTTTCTGAACAGGTCAAAATGCAGGGAAGAGTCGTCACTTTTGAATACTGAAATATTTGACAGTATGGCTCCCCTAGTTGTTTTCAAATCATCAGTCTCTGCAGAATATTATGCCAAATTGAGTTTAGAGGCTGTAATTGTTTAG 300 0.3733 MMGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEIVKFSPKLKLFLNRSKCREESSLLNTEIFDSMAPLVVFKSSVSAEYYAKLSLEAVIV 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0754 99 Gene3D - 1 93 IPR038718 -
Lele38g0754 99 PANTHER SNF2/RAD54 HELICASE FAMILY 2 78 - -
Lele38g0754 99 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 58 IPR027417 -
Lele38g0754 99 Pfam SNF2-related domain 2 60 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0754 Lele-ChrLele38 18970465 18972079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0754 2 88 RAD5 or RAD16-like Gene Family AT1G05120 30.208 1.31e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele38g0754 SNF2_N 7.2e-10 CL0023