Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0743 ATGGATATGCCCTTTTCAAACTCATTTCGCATTGATGACCTTATCAACTTCTCCAACGTAGACCTCACCACCACCACCTCCTCCTCCTCCACCGACTCCGAACGCCGCCGTCAACCACTGCTCCCTCCACCGCAAAACCCATTTCCCCATCACCACCACCACCACCACCACAACCAATCCTCCTCCACCACCTCCTTCAACGATTTCCCTCCCCTCCCTTCCGCCGACCCCACTGTCGATCTACTCATCCCCAACGACGACGTTGCGGAGCTGGAATGGCTCTCGCAATTTGTGGACCATTGCTTCCATGACGATTTTCAGGCGGCAGGTGAGACGGTGGTGGTGGGTTCTTCTGTTCCGCAATCCCACGACACGACGTTTACCAGCAAAGCTGATCTTATTCATAGCAAGCGTTCGAGAGCAGCCGGTGGGAAATCGAGACTCAAAACAGAGCCAAACGACGGGTCGTTGCCGTTGTCAGCGGCGGGAGATGGATCAGATGTGCGTAGGTGCACCCACTGTGCCACAGAGAAAACCCCGCAATGGCGAAGCGGACCACTAGGACCCAAGACGCTGTGTAACGCGTGTGGGGTAAGGTACAAGTCGGGTCGACTTGTACCCGAATACCGACCCGCATCGAGTCCAACGTTCGTGCTGAGTCAGCACTCGAACTCGCACCGGAAGGTGCTAGAGCTCCGGCGGCAGAAGGAGCTGGTGTTGATGAAGCAGGAAGCCCGACGAGAATAA 747 0.5636 MDMPFSNSFRIDDLINFSNVDLTTTTSSSSTDSERRRQPLLPPPQNPFPHHHHHHHHNQSSSTTSFNDFPPLPSADPTVDLLIPNDDVAELEWLSQFVDHCFHDDFQAAGETVVVGSSVPQSHDTTFTSKADLIHSKRSRAAGGKSRLKTEPNDGSLPLSAAGDGSDVRRCTHCATEKTPQWRSGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLSQHSNSHRKVLELRRQKELVLMKQEARRE 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0743 248 MobiDBLite consensus disorder prediction 130 147 - -
Lele38g0743 248 MobiDBLite consensus disorder prediction 23 71 - -
Lele38g0743 248 FunFam GATA transcription factor 162 247 - -
Lele38g0743 248 ProSiteProfiles GATA-type zinc finger domain profile. 165 201 IPR000679 GO:0006355|GO:0043565
Lele38g0743 248 PIRSF Txn_fac_GATA_plant 145 248 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele38g0743 248 PIRSF Txn_fac_GATA_plant 2 158 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele38g0743 248 CDD ZnF_GATA 170 217 IPR000679 GO:0006355|GO:0043565
Lele38g0743 248 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355|GO:0043565
Lele38g0743 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 227 - -
Lele38g0743 248 Pfam GATA zinc finger 171 204 IPR000679 GO:0006355|GO:0043565
Lele38g0743 248 Gene3D - 163 243 IPR013088 GO:0006355|GO:0008270
Lele38g0743 248 PANTHER GATA TRANSCRIPTION FACTOR 131 237 - -
Lele38g0743 248 MobiDBLite consensus disorder prediction 120 162 - -
Lele38g0743 248 SMART GATA_3 165 215 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0743 Lele-ChrLele38 18694309 18695245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0743 41 246 C2C2-Gata Transcription Factor Family AT2G45050 48.085 5.24e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele38g0743 GATA 1e-16 CL0167