Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0739 ATGCTTTTGTGTGTCAATTCACACCAGCCATGGAGTTCAATCACCCCAACACTCATCATGTTTCAGAAATGCAAAACCATAGACGACGTGAATCAGATGCACGCAAGAATGATCACAACTGGGCTAATCAACAACTCGTCTTTCACTACAAAACTCATCCTCACTTTTGTTTCTTCACCCTATGAGCCTATTGTTGAGCTGGCTCGCCACATCTTCTTCAAGCATCATGCTCATCGTAATCCTCGAGAACAAGAGGACCCTTTTCTCTGGAATGCCATAATCAGGTCCTACTCTCATGGGTGTTACCCAAGAGGAGCTCTGGCTATACTCTGTTTGATGCTTGAACTTGGGGTTTGTTTGGATAAGTTCTCATTTTCTCTGGTTTTGAAAGCTTGCTCTCGAGTGGGTTTGATGAAAGAAGGAATGCAGATTCATGGATTGTTGTGTAAACTTCAAATTGGGTCTGATGTATATTTGAACAATTGCTTGATTGGTTGTTTTCTGAGATTTGGGTGCTTTCAGTTTGCCCGCCAATTGTTTGACAGAATGCCTTGTCATGATTCTATCTCATATAACTCTATGATTGATGGGTATGTCAAATATGGGATGGTTGAAAGAGGACGTGAATTGTTTGACAATATGCCTATGAAGGAGAAGAATCTGATTACTTGGAACTCAATGATTGGAGGTTATGTGAGATCCAAAGATGGATTGACTTTTGCCTGGAATCTGTTTCTTAAAATGCCTGAGAGAGACTTGGTTTCATGGAACACAATGATTGATGGATGTGTAAAGCTTGGAAATATAAAAGATGCCCAGATATTGTTTAACAAGATGCCTAAAAGAGATTTGGTTACTTGGACTACTATGATAGATGGTTATGTGAAATCAGGCAATGTTCTTGTTGCTAGGAGATTGTTTGATGAAATGCCTGAGAGAAACACGATTTCTTGTAATACCATGATGGCTGGCTATGTTCAGAATGGTTATTGCGTTGAAGCTCTGAAGCTATTTCATGATATGAGAAAAAAAGCACATACACAACCAGATGATACCACCTTGTTGATTGTTCTCACAGCCATCAGCCAATTAGGACACATTGAAGTTGGAGCCGTCATACACCTATATTTAGAGGATAACAAGAGTAAATCTTTGAGTGGTAAACTTGGTGTTGCCCTAATTGACATGTACTCTAAGTGTGGAAGCATAGAGAATGCTATCTCAGTATTTGAGAATATTGATCAGAAAAGTGTTGATCATTGGAATGCTGTGATTGGTGGGTTGGCTATTCATGGTATGGGTGAAGTGGCAATCAATTTTCTCTTCCAAATGGTAAAGGATTCTGTTAAACCTGATGATATCACATTCATTGGAGTGTTGAGTGCTTGTGGGCATGCTGGTTTACTGAAGGAGGGACTGATATGTTTTGAGCTCATGCAAAGAGTATACAAGGTTGAACCTAAGGTGCAACACTATGGATGCATGGTTGATATCCTTTGTCGAGCTGGGCATGTTGAAGCAGCTAAAAACCTGGTCGAGTCAATGCCTATCGAACCAAACGATGTGATTTGGAGGACTCTGCTTAGTGCTTGTCAAATCCATGAGAACGTCTGGGTAGGGAAGCCAGTTGCCGAGCAATTGATCGAGCTAAACTCTTTCAGTCCAAGCTCCTACGTGCTCCTATCTAATGTTTATGCTAGTGTGGGCATGTGGGACAATGTGAAAATGGTCAGGACAGTGATGAAAGAGAGAAATCTAAAGAAATTACCAGGCCGTAGTTGGATTGAATTAGAAGGAGTTGTTCATCAGTTCTCTGTACAAGACAAGTCACACCCTCAAGTTAAAGAGATTTATTCCATGTTAAGTGGTTTGAGAATAGTGAAAAGTGAGTGTGGCTGCTACTTGCTATGGAAAAAAGTTATCTACCTTGAGAAACTCAACGTCAACTCCAGCAAAGCCCTCCGGCAAAATCCTAACATCCGATCAGTTCCAATTTCCACTCTCAAATCTGTACGAGACTGCCTCTCCTCAATGGGCATCGAGCGATCTGCAATGGGTCGAATCCTCGATATGTATCCCCAGCTTCTCACATGCGACCCCTATTTTGATCTCTACCCTGTTTTCGATTTCTTATTGAATGAAGTTGCAATTCCGTTCCCTGATATTCGTAAAGCAATTATACGCTGCCCAAGGCTATTGGTCTGCAGCGTGGATGAGCAACTCAGACCGATTTGGATCTGCTTACAAGGAGGTGGTAAATATGGTTATAAGGTCACCTGGATTATTGATGCTTAG 2295 0.4126 MLLCVNSHQPWSSITPTLIMFQKCKTIDDVNQMHARMITTGLINNSSFTTKLILTFVSSPYEPIVELARHIFFKHHAHRNPREQEDPFLWNAIIRSYSHGCYPRGALAILCLMLELGVCLDKFSFSLVLKACSRVGLMKEGMQIHGLLCKLQIGSDVYLNNCLIGCFLRFGCFQFARQLFDRMPCHDSISYNSMIDGYVKYGMVERGRELFDNMPMKEKNLITWNSMIGGYVRSKDGLTFAWNLFLKMPERDLVSWNTMIDGCVKLGNIKDAQILFNKMPKRDLVTWTTMIDGYVKSGNVLVARRLFDEMPERNTISCNTMMAGYVQNGYCVEALKLFHDMRKKAHTQPDDTTLLIVLTAISQLGHIEVGAVIHLYLEDNKSKSLSGKLGVALIDMYSKCGSIENAISVFENIDQKSVDHWNAVIGGLAIHGMGEVAINFLFQMVKDSVKPDDITFIGVLSACGHAGLLKEGLICFELMQRVYKVEPKVQHYGCMVDILCRAGHVEAAKNLVESMPIEPNDVIWRTLLSACQIHENVWVGKPVAEQLIELNSFSPSSYVLLSNVYASVGMWDNVKMVRTVMKERNLKKLPGRSWIELEGVVHQFSVQDKSHPQVKEIYSMLSGLRIVKSECGCYLLWKKVIYLEKLNVNSSKALRQNPNIRSVPISTLKSVRDCLSSMGIERSAMGRILDMYPQLLTCDPYFDLYPVFDFLLNEVAIPFPDIRKAIIRCPRLLVCSVDEQLRPIWICLQGGGKYGYKVTWIIDA 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0739 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Lele38g0739 764 TIGRFAM PPR: pentatricopeptide repeat domain 316 344 IPR002885 -
Lele38g0739 764 TIGRFAM PPR: pentatricopeptide repeat domain 285 314 IPR002885 -
Lele38g0739 764 TIGRFAM PPR: pentatricopeptide repeat domain 189 216 IPR002885 -
Lele38g0739 764 TIGRFAM PPR: pentatricopeptide repeat domain 254 284 IPR002885 -
Lele38g0739 764 TIGRFAM PPR: pentatricopeptide repeat domain 421 452 IPR002885 -
Lele38g0739 764 TIGRFAM PPR: pentatricopeptide repeat domain 89 121 IPR002885 -
Lele38g0739 764 Pfam PPR repeat family 314 360 IPR002885 -
Lele38g0739 764 Gene3D Tetratricopeptide repeat domain 217 282 IPR011990 GO:0005515
Lele38g0739 764 SMART mt_12 723 754 IPR003690 GO:0003690|GO:0006355
Lele38g0739 764 SMART mt_12 686 718 IPR003690 GO:0003690|GO:0006355
Lele38g0739 764 SMART mt_12 651 681 IPR003690 GO:0003690|GO:0006355
Lele38g0739 764 Pfam mTERF 674 746 IPR003690 GO:0003690|GO:0006355
Lele38g0739 764 Gene3D Tetratricopeptide repeat domain 3 147 IPR011990 GO:0005515
Lele38g0739 764 Gene3D Tetratricopeptide repeat domain 390 478 IPR011990 GO:0005515
Lele38g0739 764 Gene3D Tetratricopeptide repeat domain 283 389 IPR011990 GO:0005515
Lele38g0739 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Lele38g0739 764 Gene3D Tetratricopeptide repeat domain 479 547 IPR011990 GO:0005515
Lele38g0739 764 Gene3D Tetratricopeptide repeat domain 148 216 IPR011990 GO:0005515
Lele38g0739 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Lele38g0739 764 Gene3D Transcription termination factor 3, mitochondrial 602 753 IPR038538 -
Lele38g0739 764 FunFam Pentatricopeptide repeat-containing protein 391 630 - -
Lele38g0739 764 Pfam PPR repeat 254 283 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 89 118 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 161 184 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 420 448 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 455 481 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 492 515 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 189 215 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 392 414 IPR002885 -
Lele38g0739 764 Pfam PPR repeat 222 236 IPR002885 -
Lele38g0739 764 Pfam E motif 534 596 IPR046848 -
Lele38g0739 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 282 IPR002885 -
Lele38g0739 764 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 241 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0739 Lele-ChrLele38 18661593 18666791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0739 90 632 Glycoside Hydrolase AT3G49170 31.616 1.91e-85 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lele38g0739 mTERF 1.5e-06 No_clan