Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0733 ATGAGCTTCTGCGTTCCCACCTGGGATGTTGACAACAGCAATATTCCCTCTGCCCCCATAACCTCTCTTCCTTCTAACTCCAACTCCACCGTCCCTGATCTCATCCCCACGTTTGACTATGAAGTTGCAGAGCTCACATGGCAGAACGGGCAGATATGGATGAAAGGGATGGGTCTGCCACGACCTCCGGCGAAACACATGACTTCTGGTGTGGCGGCGGGTGCGAGGTCCGATCCGTTGACGACCACTACCCATTCGAAGTTTCGTGCTAGCGGTACCTTAGAGTCTATAGTCAATCAGGCTACTAGGTTTTCCCAGAACACCAAATCAATGTCACAAAGTGTTGACAGTGACGGAGATAAGTTAGTAGTGCCATGGTTTGAACACCAACGTGGCGGCAACGGCGGCAACGGCGCTGCTGTATCAAACACAATGACTATGGATGCTTTGGTTCCGTGCTCGAATCGTACGGACGAGCAGAGTACGGCGGTTGTGGATGAATTCATGGGTGGTGGAGGGATTGGCACGCGCGGCGGCGGGGTCGGTTGCTCGGCACATGTGGTGTCTTGCGGAGGTGCTGCGAGGGTCCCGAGGGAGGCGCGTGTGCCTGTAGCTCGCCAGTGGGATCAAACTGTGAGTGAGAGAGATAGCCATCACGTGACCCCTGACACGTGCGACATGGAAATGGATAAAAGGCGAGATAAGATAAACCAAAGGATGAAGACATTGCAGAAGCTGGTTCCAAATTCAAGCAAGACTGATAAAGCTTCAATGCTGGATGAGCAACAATTTCAACTCATGTCCATGATGGCTCCAATGGGGATGGGATTTGGTATGGATATGAACACTATGGCCCGCCCTAACATCCCCACCGTGCCTTCGATTCTCCACCCTTCCATTGCGGCCGGCTTCATGCCGGTGGCCGCCTCATGGGACGCTTCTACTGGCAGCAATCGGCTTCAAGGAGCAATGCCTGACTTCTTGTCCTCATTCATAGCATGCCAAACACAGCCCATGACCATGGATGCATACAGTAGGATGGCTGCTATGTATCAGCAAATGCAGCAAGCTCCAGCAACAAGTCCCAAGAACTGA 1095 0.5288 MSFCVPTWDVDNSNIPSAPITSLPSNSNSTVPDLIPTFDYEVAELTWQNGQIWMKGMGLPRPPAKHMTSGVAAGARSDPLTTTTHSKFRASGTLESIVNQATRFSQNTKSMSQSVDSDGDKLVVPWFEHQRGGNGGNGAAVSNTMTMDALVPCSNRTDEQSTAVVDEFMGGGGIGTRGGGVGCSAHVVSCGGAARVPREARVPVARQWDQTVSERDSHHVTPDTCDMEMDKRRDKINQRMKTLQKLVPNSSKTDKASMLDEQQFQLMSMMAPMGMGFGMDMNTMARPNIPTVPSILHPSIAAGFMPVAASWDASTGSNRLQGAMPDFLSSFIACQTQPMTMDAYSRMAAMYQQMQQAPATSPKN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0733 364 MobiDBLite consensus disorder prediction 64 84 - -
Lele38g0733 364 Pfam Helix-loop-helix DNA-binding domain 231 260 IPR011598 GO:0046983
Lele38g0733 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Lele38g0733 364 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 362 IPR031066 -
Lele38g0733 364 Gene3D - 226 263 IPR036638 GO:0046983
Lele38g0733 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 261 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0733 Lele-ChrLele38 18498656 18502276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0733 1 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 33.030 3.07e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele38g0733 HLH 4.4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0733 38 18498656 18502276 Lele39g0646 39 6613201 6616633 hybridization
Lele38g0733 38 18498656 18502276 Lele40g0659 40 14620162 14623665 hybridization