Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0729 ATGGCTCTTAGTTGCTTCTTGTTCTTCCTTATAGTGATAAGTTCTTCATACCCCACTGATTCATCAGAGTGGTCCTCAACTGATGCGACGTGGTATGGAAGCCCTAACGGAGCTGGAACTGATGGGGGTGCTTGTGGATATGGCAGTGATGTAGGAAAAGCTCCCTTCTCTTCGATGATAGCAGCTGGAGGCCCACCAATTTATAACTCAGGCTATGGGTGTGGATCTTGTTATCAGGTGAAGTGCACATCTAATCCAGCATGTTCAGGTAGTCCAGTGAGCATAGTTATCGCTGATGCGTGTCCTGGGTGTGGCTCTACTCAAAGATTTCACTTTGATTTGAGTGGCACAGCTTTTGGTGCTATGGCTATTTCTGGCCAAGCTGATCCGTTACGCAATGTTGGCAAGCTAGAGATTCAATATAAAAGAATTGAATGTAATTATCCAGGAAAATCAATAGAATTTAAAGTGGACGCAGGATCGAACCAATACTATTTTGCTGTGTTGATAGAATACGTGAATGGAGATGGTGATCTTTCACTTGTTGAACTGAAGCAAGCTAACTCTACAAAATGGCAAGCCATGCAAATAAATTCAGGTGCAACATGGAAGCTTAACTCTGGCACACCACTTCAAGCCCCGTTCTCCATTAGGTTAACCACGTTCAAGTCAAAGAAGACCCTTGAGGCCATCAATGTGATTAAAGCAGGGTGGAGTCCAGGCCAAATTTATCAATCTTCTGTGAACTTCTAA 753 0.4356 MALSCFLFFLIVISSSYPTDSSEWSSTDATWYGSPNGAGTDGGACGYGSDVGKAPFSSMIAAGGPPIYNSGYGCGSCYQVKCTSNPACSGSPVSIVIADACPGCGSTQRFHFDLSGTAFGAMAISGQADPLRNVGKLEIQYKRIECNYPGKSIEFKVDAGSNQYYFAVLIEYVNGDGDLSLVELKQANSTKWQAMQINSGATWKLNSGTPLQAPFSIRLTTFKSKKTLEAINVIKAGWSPGQIYQSSVNF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0729 250 Pfam Expansin C-terminal domain 153 234 IPR007117 -
Lele38g0729 250 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Lele38g0729 250 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Lele38g0729 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Lele38g0729 250 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Lele38g0729 250 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lele38g0729 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Lele38g0729 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Lele38g0729 250 Gene3D - 148 250 IPR036749 -
Lele38g0729 250 Gene3D - 11 147 IPR036908 -
Lele38g0729 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 151 IPR007112 -
Lele38g0729 250 SUPERFAMILY Barwin-like endoglucanases 11 150 IPR036908 -
Lele38g0729 250 Pfam Lytic transglycolase 61 140 IPR009009 -
Lele38g0729 250 PRINTS Major pollen allergen Lol pI signature 62 73 IPR005795 GO:0005576|GO:0019953
Lele38g0729 250 PRINTS Major pollen allergen Lol pI signature 201 218 IPR005795 GO:0005576|GO:0019953
Lele38g0729 250 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576|GO:0019953
Lele38g0729 250 PRINTS Major pollen allergen Lol pI signature 155 170 IPR005795 GO:0005576|GO:0019953
Lele38g0729 250 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Lele38g0729 250 PRINTS Major pollen allergen Lol pI signature 82 92 IPR005795 GO:0005576|GO:0019953
Lele38g0729 250 PANTHER EXPANSIN-B3 10 250 - -
Lele38g0729 250 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0729 Lele-ChrLele38 18408140 18410559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0729 15 250 Expansin Gene Family AT1G65680 59.072 4.53e-101 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0729 38 18408140 18410559 Lele39g0648 39 6663335 6665460 hybridization
Lele38g0729 38 18408140 18410559 Lele40g0662 40 14722395 14725288 hybridization