Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0721 ATGGATCATTCCACATACCAACAACATCAGCAGCAGCAGGAACAAGGCTACGACTCATCTCAAAATCAAGCCTTCGATCAATCTTCCCAATCCTATTATGGCTACAATCAACAATACGACCAGCAATACGCATACTATTCTAATCAAGATCAAGGAAATTCATATGCTCACCAACAATACCAGCAAGAATCCACCTCCATTCACCCTCCTGGAGTCCCAATACCTCCCGAACAGGCTCAGATTCAAAATCAACAAGTTTCTAACCAGGATTCAGGTGCGGCGCTCGGTGGCCCAATGAATCCGGCAGCGGCAGCTGTGGCTATAGCTGCTCTCTCGCAGCTCACTCAGTTTGCTGGAAACCCTCCGATTGGACAGTCTCGATATAGAGTTGGTGGTGGTAGGGGCAGTAGACCATGTAGACGGGGTGGCCGTGGCCATTTCAATCCTCGAGGGCGTGGCCCTTACCGTGGTGGAGGACGTGGCCATGGGGTTGGTAGGCACTTACCATCTCATTCTTCAGAATTTGTACCTGCTGCTGCTGGAGGCACATCGGTGCCACAAGCTTCACCTTCAGTATCTGGGCCTATTCCAGCACAGGTTCCAGCTGCACCATTGCATCCACCACCATGTAAATTATGGTGTGAAATTTGCAAAGTTGAGTGCAATTCTGCTGAGATTATGGAGCAGCATAAGAATGGAAAGCGGCATAAAAAGAATTTGCAGGTACATGAGGAATTACAGAGGCGCAAAGCTATAAATGGACAACAGAGTAGCCAGATTCCCTCTTCTCAATTGAATTTAACAACTCAGTATGAGAATGCTCTTGAATTGAAGACAGAAGGATGTCCAGCAGAAAATATGATCTCTGGAGCGACAGATGACAATCCTAAGAATGAACTTGATTTGCAGAACAATACAGGAGAAACATCAGAAGTTCCAGCTGATGACCCTGAGGAAAACCCCATGGATGGTTTGGCTTCAAGGGGCCGTGGTTTGAAGCGAAAGATGAGAGGAGGCAGAGGAGGTAAATACATGAGAAATAATGACGGGTCAAGAAAGCCAGTGGAACCTCCAAAACCTAAACAGGCTATATCTTTCATATGTGAGTTGTGCAATGTTATATGTGAGTCACAGGTTGTTTATGACAGTCATTTGACTGGTAAAAAGCACCAATCAAATCTCAAACGCATCAGTGGCCACCAAGCCATGTCCCATGAACCAGGTCCGCGAGCATTTCCCTCAACTAACATCAGTGCTGTGTCTAATTCTATTGACATCAATGCTCTTGCAAATTCAATTAACTCTCAAGTCCAACAAGGTGTTAATGATCCACAAGTCCTCTTGGCTCAGCTCCTAATGACAGTACTGTCTCAAGCTCAAGCATCAACAGCAGCAACACCCATAGGATCTGTAGCCACTCAGCTTTCGGCACTTATACCTGGGGCTGGCTCAAGTTATGGGCCACCATTACAAAATGTCCCGCCGACACAAGCGTTGGAAAGTGCTGCGCATGGTGGGAATGAAAATCCTACAAGGGAAGCAAAAGATCAGGTGCTATCTTACCCACCGCTGGCTGATGCTCCTCAAACTGCAGGTGGTAATTCTGAAACTGAAGAGAAGGTACCTCCAGAAAATCCAAGTGCTGCAAATGAGCAAGGTCCTTCAGAAGGCAATGCTCCTACTTCGTAG 1689 0.4671 MDHSTYQQHQQQQEQGYDSSQNQAFDQSSQSYYGYNQQYDQQYAYYSNQDQGNSYAHQQYQQESTSIHPPGVPIPPEQAQIQNQQVSNQDSGAALGGPMNPAAAAVAIAALSQLTQFAGNPPIGQSRYRVGGGRGSRPCRRGGRGHFNPRGRGPYRGGGRGHGVGRHLPSHSSEFVPAAAGGTSVPQASPSVSGPIPAQVPAAPLHPPPCKLWCEICKVECNSAEIMEQHKNGKRHKKNLQVHEELQRRKAINGQQSSQIPSSQLNLTTQYENALELKTEGCPAENMISGATDDNPKNELDLQNNTGETSEVPADDPEENPMDGLASRGRGLKRKMRGGRGGKYMRNNDGSRKPVEPPKPKQAISFICELCNVICESQVVYDSHLTGKKHQSNLKRISGHQAMSHEPGPRAFPSTNISAVSNSIDINALANSINSQVQQGVNDPQVLLAQLLMTVLSQAQASTAATPIGSVATQLSALIPGAGSSYGPPLQNVPPTQALESAAHGGNENPTREAKDQVLSYPPLADAPQTAGGNSETEEKVPPENPSAANEQGPSEGNAPTS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0721 562 MobiDBLite consensus disorder prediction 489 504 - -
Lele38g0721 562 MobiDBLite consensus disorder prediction 77 94 - -
Lele38g0721 562 MobiDBLite consensus disorder prediction 125 193 - -
Lele38g0721 562 MobiDBLite consensus disorder prediction 1 96 - -
Lele38g0721 562 PANTHER OS06G0651300 PROTEIN-RELATED 7 434 - -
Lele38g0721 562 MobiDBLite consensus disorder prediction 285 359 - -
Lele38g0721 562 Pfam Zinc-finger of C2H2 type 213 236 - -
Lele38g0721 562 Pfam Zinc-finger of C2H2 type 366 390 - -
Lele38g0721 562 SUPERFAMILY beta-beta-alpha zinc fingers 359 397 IPR036236 -
Lele38g0721 562 MobiDBLite consensus disorder prediction 486 562 - -
Lele38g0721 562 SMART ZnF_U1_5 363 397 IPR003604 GO:0003676|GO:0008270
Lele38g0721 562 SMART ZnF_U1_5 211 243 IPR003604 GO:0003676|GO:0008270
Lele38g0721 562 Gene3D Classic Zinc Finger 207 245 - -
Lele38g0721 562 Gene3D Classic Zinc Finger 347 396 - -
Lele38g0721 562 MobiDBLite consensus disorder prediction 291 311 - -
Lele38g0721 562 MobiDBLite consensus disorder prediction 1 68 - -
Lele38g0721 562 MobiDBLite consensus disorder prediction 548 562 - -
Lele38g0721 562 SUPERFAMILY beta-beta-alpha zinc fingers 211 243 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0721 Lele-ChrLele38 18187981 18195364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0721 366 394 C2H2 Transcription Factor Family AT5G61190 58.621 7.64e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0721 38 18187981 18195364 Lele39g0670 39 7080870 7084554 hybridization
Lele38g0721 38 18187981 18195364 Lele40g0674 40 15254227 15261372 hybridization