Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0709 ATGAAACGGGAAGTGCAGCTAGAGCCGCCAGTTACACAAAAGCTTGGGGATTCCGACCCTCTACTCGGTAATCAGGAGGAGGAGGAGGAGGAGGAAGAGCGGAAGGAGGAGTGCCCAGGAAGCACGAGTGAAATTAGGAGTGAAGATGCCGAGGCTGGTTTACTTCCTTCTTGTCGAATATGCCTGGAAAGCGATTCCGACCCAGGTGATGAATTGATATCACCGTGCATGTGCAAGGGGACCCAGCAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTCTCACACTGCACCACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATCGTTTGAGGACAACTCCTGGCGTAAAATAAAGTTCAGGCTTTTTGTGGCAAGGGATGTTTTTCTTGTATTTTTGGCTGTACAAACTGGGATTGCGGCAATGGGTGCCTTTGCATACCTTATGGACAAAGATGGGGCATTCAGGAACTCTTTCGATGATAGTTGGGATCGGATACTGTCAAACCATCCTATACCATTTTATTACACTATTGGAGTGCTAGCCTTCTTTGTGCTGCTTGGATTTTTTGGTCTCATTCTACATTGTTCCTCCCTCAATGCCAGTGACTCCAGAATGGCTGGGTGTCAGAACTGTTGTTATGGATGGGGCATTTTGGATTGCTTTCCGGCATCAATGGAAGCATGCTTTGCCCTTGTGGTTGTTTTCGTCGTCATCTTTGCAATTTTGGGTATAGCTTATAGTTTCCTGGCAGCCACCATGGCAATTCAAAGAATTTGGCAGAGACACTACCACATACTGACCAAGAGGGAGCTAACTCAGGAATATGTTGTTGAGGATCTCCAAGGTTCTTATTCCCCACCAAAATTGGACCCAGAACATGAAGAGCGCTTGAAAATGCTCAAGCTTTTGTGA 942 0.466 MKREVQLEPPVTQKLGDSDPLLGNQEEEEEEEERKEECPGSTSEIRSEDAEAGLLPSCRICLESDSDPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLFVARDVFLVFLAVQTGIAAMGAFAYLMDKDGAFRNSFDDSWDRILSNHPIPFYYTIGVLAFFVLLGFFGLILHCSSLNASDSRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTQEYVVEDLQGSYSPPKLDPEHEERLKMLKLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0709 313 SUPERFAMILY RING/U-box 56 113 - -
Lele38g0709 313 SMART ringv_2 57 109 IPR011016 GO:0008270
Lele38g0709 313 ProSiteProfiles Zinc finger RING-CH-type profile. 50 115 IPR011016 GO:0008270
Lele38g0709 313 MobiDBLite consensus disorder prediction 1 50 - -
Lele38g0709 313 CDD RING_CH-C4HC3_MARCH 58 109 - -
Lele38g0709 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 121 IPR013083 -
Lele38g0709 313 Pfam RING-variant domain 58 108 IPR011016 GO:0008270
Lele38g0709 313 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0709 Lele-ChrLele38 17760765 17763280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0709 1 313 C3H Transcription Factor Family AT1G11020 76.250 3.63e-168 468