Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0688 ATGTCCGCCTCATCCACTGCCTCCTTTTCACCGGACCAGCACCTCCCCTCTCCCTCCGACCAGCTCGTTTATGTCCATTGCGACTTCTGTCACACTGTTGTCGCGGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTGTACGATGTGGTCATTGCACCAACCTTCTCTCTGTCAATATGCGTGGCCTGCTTCTTCCTTCTGCCAATCAGCTTCATCTTGGACACTCCTTCTTCCCTCCCCAAAACCTTCTGGAGGATATTCGAAGTGCACCTTCATCAAATATGGTGATGAATCAGCTACAGAATAACCCAAATGATTCTGTTATGACTATGAGCACCATGCGAGCACGACCTGAGGAAATCCCTAAGCCTCATCCGGCTAACAGACCTCCAGAGAAAAGACAGAGAGTCCCATCTGCTTACAATCGCTTCATCAAGGACGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCTTTCAGTGCTGCTGCAAAGAATTGGGCCCATTTCCCCCATATCCGCTTCGGACTGATGCCAGATCATCAACCCGTGAAGAAAGCTAATGTCCGCCAGGAAGGAGAGGATGTGCTTATGAAAGATGGGTTTTTTTCTCCGGCAAACGAAGGGGTCTCCCCATTTTAG 663 0.4947 MSASSTASFSPDQHLPSPSDQLVYVHCDFCHTVVAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHSFFPPQNLLEDIRSAPSSNMVMNQLQNNPNDSVMTMSTMRARPEEIPKPHPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIRFGLMPDHQPVKKANVRQEGEDVLMKDGFFSPANEGVSPF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0688 220 PANTHER PROTEIN YABBY 6-RELATED 5 196 IPR006780 GO:0007275
Lele38g0688 220 Pfam YABBY protein 18 184 IPR006780 GO:0007275
Lele38g0688 220 Gene3D High mobility group box domain 123 180 IPR036910 -
Lele38g0688 220 SUPERFAMILY HMG-box 129 178 IPR036910 -
Lele38g0688 220 FunFam Axial regulator YABBY 129 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0688 Lele-ChrLele38 16116428 16119561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0688 29 218 C2C2-YABBY Transcription Factor Family AT4G00180 62.559 1.40e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele38g0688 YABBY 3.4e-70 CL0114