Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0616 ATGAGTTTTGGGGGTTTTCTCGACAATAACTGGGGTGGTAGTGGTGGGGGGTCTGGCGATGCCAGAATCGTCGCTGATATCCCTTACAGTAACGGCACAAACGATAATAGAATGGCGTCGGGTGGTTCAATCTCACAGCCTCGTCTTCTCCCACCACCCACCATGGCCAAATCCATGTTCAGCTCTCCTGGGCTTTCTCTCGCACTTCAAACGAATCTTGACGAGCAACAAGTAGGAGATGCGAATAGAATGCCTGCTGCAGAGAGCTACGAGCCAAATGTTGGGGCAAGAAGAAGCAGAGAAGAAGAACACGAAAGCAGATCTGGCAGTGATAATATGGAAGGCCCCACTTCCGGCGACGATCAGGATGCCGCCGACATCCCTCCGAGGAAAAAACGCTATCACCGACATACCCCTCAGCAAATACAAGAACTCGAAGCTCTCTTCAAGGAGTGCCCACACCCAGATGAGAAACAAAGACTAGAACTTAGCAGAAGGCTTTGCTTAGAAACCAGACAGGTGAAATTTTGGTTCCAAAATCGAAGAACCCAGATGAAGACCCAGTTGGAGCGCCATGAAAACAGTTTGCTGAGGCAAGAGAACGATAAACTGAGAGCAGAGAACATGTCTATAAGAGAAGCCATGAGGAATCCGATATGTTCAAATTGTGGAGGGCCAGCCATTTTAGGCGAGATTTCACTCGAAGAACAACACCTAAGAATTGAAAATTCTCGATTGAAGGACGAACTAGACCGAGTTTGTGCTCTGGCCGGAAAGTTTCTTGGCCGACCCATTTCTTCATTAACCAGTCCGATTGGTCCTCCATTGCCGAACTCAAGCTTAGAACTCGGAGTTGGCATCAACGGGTTCGGTGGAATAAGCACCGTGTCTCCTTCAACATTACCTCTAGGGCCTGCAGATTTCGGGATTTCAAGCCAATTAGCCGTGGTTAATCCGGCGACGACAACATCGGCAACAACTATGACAAGACCATCGGGAGGTTTGGTTGTCGTCGGCGGGCTTGATAGGTCGCTAGAGAGGTCTATGTTTCTGGAGCTGGCTTTGGCGGCCATGGACGAGTTAGTGAAGATGGTTCATACAGATGAACCTCTCTGGTTAAGAAGCCTAGAAGAAGGAGGAGGAGGAGGAGGAGGAAGAGAGATTCTGAACCATGAAGAGTACATGAGAACGTTCAGTAATCCTTGCATTGGAGTGAGACCTAATGGCTTCGTCTCCGAAGCTTCTAGAGAAACTGGAATGGTCATCATCAACAGCTTGGCCCTCGTGGAAACTCTCATGGATTCAAGTCGTTGGGCAGAAATGTTCCCTTGTTTGATCGCCAGAACCTCAACCACAGAAGTAATCTCCAGTGGAATAAACGGAACCAGAAACGGTGCACTGCAACTGATGCACGCTGAGCTTCAGGTTCTATCGCCATTGGTGCCAGTTCGAGTGGTGAATTTTCTTCGATTCTGCAAGCAACACGCAGAGGGGGTGTGGGCTGTGGTTGATGTCTCAATTGATAACATTATTCGAGAAGCTTCTTCAGGAGCTGCATGTTTTATGAACTGTAGAAGGCTTCCTTCTGGGTGCGTTGTTGAAGATATGCCAAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATACGATGAAAGCCAAGTCCACCAACTCTACAGACCCTTGTTGAGCTCCAGCATGGGCTTCGGAGCTCAACGGTGGGTCTCCACCCTACAACGCCAATGCGAGTGCCTCGCCATCTTAATGTCATCCTCCGTCCCCTCTCGTGATCACACTGCTGCCATAACGGCCGGTGGCCGGAGGAGCATGTTGAAGCTAGCGCAGCGAATGACCAACAATTTCTGCGCCGGCGTTTGCGCTTCCACGGTGCACAAGTGGAACAAGCTGAACGCCGGCAACGTGGACGAGGACGTCCGGGTGATGACTCGAAAGAGCGTGGACGATCCCGGCGAGCCGCCGGGCATAGTTTTAAGCGCAGCGACCTCCGTTTGGCTTCCGGTTTCGCCCCAGAGGCTGTTTGATTTCCTACGTGATGAACGTCTCAGAAGCGAATGGGACATACTCTCAAACGGTGGGCCCATGCAAGAGATGGCCCACATTGCCAAAGGCCAAGACCACGGCAATTGCGTCTCCCTCCTTCGAGCCAGTGCGATGGATGCAAACCAGCGTAGCATGCTGATACTGCAGGAGACATGTATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCATGTCGTGATGAACGGCGGCGACTCGGCTTACGTGGCGTTGTTGCCGTCCGGTTTCGCTATAGTACCTGATGGACCGGGATCGCGTGGGTCCCAAACGCCGGCGAGCAACGGGAACGCGAACGGAAACGGCAGCGTGAATGAGAGGGTAAGTGGGTCCCTCTTGACGGTGGCTTTTCAAATCCTCGTGAATAGCCTACCTACGGCCAAGCTCACTGTGGAATCGGTGGAGACGGTGAACAACCTCATCTCGTGCACCGTTCAGAAAATAAAGGCCGCTCTTCACTGTGAAAGCTGA 2571 0.5177 MSFGGFLDNNWGGSGGGSGDARIVADIPYSNGTNDNRMASGGSISQPRLLPPPTMAKSMFSSPGLSLALQTNLDEQQVGDANRMPAAESYEPNVGARRSREEEHESRSGSDNMEGPTSGDDQDAADIPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIREAMRNPICSNCGGPAILGEISLEEQHLRIENSRLKDELDRVCALAGKFLGRPISSLTSPIGPPLPNSSLELGVGINGFGGISTVSPSTLPLGPADFGISSQLAVVNPATTTSATTMTRPSGGLVVVGGLDRSLERSMFLELALAAMDELVKMVHTDEPLWLRSLEEGGGGGGGREILNHEEYMRTFSNPCIGVRPNGFVSEASRETGMVIINSLALVETLMDSSRWAEMFPCLIARTSTTEVISSGINGTRNGALQLMHAELQVLSPLVPVRVVNFLRFCKQHAEGVWAVVDVSIDNIIREASSGAACFMNCRRLPSGCVVEDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSSMGFGAQRWVSTLQRQCECLAILMSSSVPSRDHTAAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMDANQRSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSQTPASNGNANGNGSVNERVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0616 856 Pfam START domain 352 585 IPR002913 GO:0008289
Lele38g0616 856 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Lele38g0616 856 CDD homeodomain 130 188 IPR001356 GO:0003677
Lele38g0616 856 FunFam Homeobox-leucine zipper protein HDG1 118 204 - -
Lele38g0616 856 Coils Coil 182 217 - -
Lele38g0616 856 MobiDBLite consensus disorder prediction 787 802 - -
Lele38g0616 856 SMART START_1 352 585 IPR002913 GO:0008289
Lele38g0616 856 MobiDBLite consensus disorder prediction 29 43 - -
Lele38g0616 856 MobiDBLite consensus disorder prediction 94 110 - -
Lele38g0616 856 Pfam Homeodomain 131 186 IPR001356 GO:0003677
Lele38g0616 856 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 128 853 IPR042160 -
Lele38g0616 856 FunFam Homeobox-leucine zipper protein GLABRA 2 352 584 - -
Lele38g0616 856 CDD START_ArGLABRA2_like 347 584 - -
Lele38g0616 856 SMART HOX_1 129 192 IPR001356 GO:0003677
Lele38g0616 856 MobiDBLite consensus disorder prediction 82 138 - -
Lele38g0616 856 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Lele38g0616 856 ProSiteProfiles START domain profile. 343 588 IPR002913 GO:0008289
Lele38g0616 856 SUPERFAMILY Bet v1-like 345 585 - -
Lele38g0616 856 Gene3D - 118 204 - -
Lele38g0616 856 SUPERFAMILY Bet v1-like 614 849 - -
Lele38g0616 856 SUPERFAMILY Homeodomain-like 115 188 IPR009057 -
Lele38g0616 856 MobiDBLite consensus disorder prediction 1 58 - -
Lele38g0616 856 MobiDBLite consensus disorder prediction 783 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0616 Lele-ChrLele38 5322547 5328162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0616 1 856 Homeobox Transcription Factor Family AT3G61150 64.740 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele38g0616 START 8.9e-51 CL0209