Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0580 ATGCGGCTAAAGCTCCGTCTCTCCATCACCCAATGGCTGGAAACAAAGGATTGCCATTTCCTTCTCCTTCTGCCCCAAAACGGCTTCTTACAGCAGAAGAAGAGCAGGTCGGGAAAATGCCGGCTTATTCAGGAAATCGGCGATTTTCGGAAACCATATACTTTTGACCGGAAAATTAGGCGAAAGCATGGTGGTTTCAACCTTGTCCTTCCAAATGGTGCTCATCCTCCTTGCTGCTGGCTCCCGTGGTTGCACCCGCGATCACCTTCTCACCTTCTTCAACGCCAATTCCGTCGATCGGCTCCTGATGTGATGGAACAAATTAATTCCTGGGTGGAAAATGAGACAAGAGGACCAGGCGAAGCCCTAGATTTTGCATTGGTTCAGGGGAGCTTCCGCAGACATCGTCAAAAAATGGGTGAGGAGGTTAAGACAATTGTTCCAGAGACTGTGTTGAAGAAGAGGAAGAGAGAAGAGGAATGGGCATTGGCCAAGGCACAGGAGACTGAAGCTGCAAAAAAGAAGAGAGCTGAGAGCCGAAAGCTGATCTACAACAGAGCTAAGCAGTATGCCAAGGAGTATGAGGAGCAGGATAAGGAGTTGATTAGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAACTATTGTTTATTGTTCGCATCCGTGGTATTAATGCCATGCACCCAAAGACAAGGAAGATCTTGCAGCTCTTGCGTTTGAGGCAGATCTTCAATGGCGTGTTTCTTAAAGTGAACAAGGCTACAATGAACATGCTTCACAGGGTTGAACCTTATGTGACCTATGGGTATCCAAACTTGAAGAGTGTAAGAGAACTTATTTACAAGAGGGGCTATGGTAAGATCAACAAGCAGAGAATTGCTTTAACTGACAATTCCATCATTGAGCAGGCACTGGGCAAGTATGGAATCATATCTACTGAAGATCTTATCCATGAGATCATAACAGTTGGATCTCACTTTAAAGAGGCCAACAACTTCCTTTGGCCCTTTAAACTCAAGGCACCTCTGTGTGGACTAAAGAAGAAGAGAAACCACTATGTTGAAGGTGGTGATGCTGGAAACCGTGAGAATTACATCAACGAGCTCATTAGGAGAATGAACTAG 1146 0.4538 MRLKLRLSITQWLETKDCHFLLLLPQNGFLQQKKSRSGKCRLIQEIGDFRKPYTFDRKIRRKHGGFNLVLPNGAHPPCCWLPWLHPRSPSHLLQRQFRRSAPDVMEQINSWVENETRGPGEALDFALVQGSFRRHRQKMGEEVKTIVPETVLKKRKREEEWALAKAQETEAAKKKRAESRKLIYNRAKQYAKEYEEQDKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKINKQRIALTDNSIIEQALGKYGIISTEDLIHEIITVGSHFKEANNFLWPFKLKAPLCGLKKKRNHYVEGGDAGNRENYINELIRRMN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0580 381 CDD Ribosomal_L7_archeal_euk 222 381 IPR035808 -
Lele38g0580 381 ProSitePatterns Ribosomal protein L30 signature. 241 273 IPR018038 -
Lele38g0580 381 Pfam Ribosomal protein L30p/L7e 223 273 IPR016082 -
Lele38g0580 381 SUPERFAMILY Ribosomal protein L30p/L7e 222 381 IPR036919 -
Lele38g0580 381 TIGRFAM uL30_euk: 60S ribosomal protein uL30 148 381 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lele38g0580 381 FunFam 60S ribosomal protein L7 327 381 - -
Lele38g0580 381 Gene3D - 325 381 IPR036919 -
Lele38g0580 381 Gene3D - 222 324 IPR036919 -
Lele38g0580 381 PANTHER 60S RIBOSOMAL PROTEIN L7 145 381 IPR039699 -
Lele38g0580 381 Coils Coil 187 211 - -
Lele38g0580 381 FunFam 60S ribosomal protein L7 222 326 - -
Lele38g0580 381 Pfam Ribosomal L30 N-terminal domain 147 218 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0580 Lele-ChrLele38 4876890 4883245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0580 142 381 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.750 9.65e-149 419