Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0559 ATGTCCACTGTGTTAGTTCTCATCTTCTTCGTTTCAACTTCGTTATCTCTGTATTCCCATGGCGGCGAGGCCTCGGTGGTTATTGTGTCCAAGGATGGGGATGGAGATTATGAAAGTGTGAGTGAAGCCATAGCCAAAGCTCCCGAGTTCAGTGAAGAACCCTACACCATTCAAGTTCGAGGTGGCACTTATAAAGAGTACATCGTGGTTCCGCAGAAGAAAACTAACATTAAGCTCGTCGGCGACGGCCCTCGTCAGACCAGAATAGATGGCTCCCACCATGGCACCACCCTCGATGTCTATGGAGATGGGTTCATGGCGGAGAACATAGGGCTGGTGAACTCAGCCGGGTTAAAAGCTAGCGCCGCCGTGACAGTTCGCAATGAAGCCAACAACAGCATCTTCTTCCAATGCTCCATCGAAGGCTTCCAAGACACACTCTGGGCCGTTGCCGGCCGCCAGTTCTACAAGAACTGCGACATCTATGGCACCGTGGACTTCATCTATGGCGACGCCTCTGCCCTCTTTCAGGACTGTAACCTCTACGCTCGCTACCGGCCTTACGTCACATTCACCGCCCAGTCACGTGACAGCCCCGACGAGCACACCGCCTTCGCCTTCCAACAATGTCACTTCACAATGGCCCCTGAGGACGCCGGCATGAAGTCGAAGGTCCGTGCCACATTGGGAAGGCCGTGGCGGCCGTATTCAACGGTGGCCGTGATTGACTCGTTCATTGACTCTATGGTTGACCCCACGGGATGGGAAGAGATGCAAGGGCAGCCTACAGATAAAGTGACGTATGTGGAATTTAATAACTATGGGCCTGGATCCAACACTTCTGGTAGAGTCAACTGGCCCGGTGTTAGAGTCCTTGATGACCCAAATGAGGCCCAACGTTTTACAGCTTCCGTTTTGTTAGACGCTGATTCTTGGATCCCCGACAAGGGGGTTCCTTATAATTCATAG 969 0.5263 MSTVLVLIFFVSTSLSLYSHGGEASVVIVSKDGDGDYESVSEAIAKAPEFSEEPYTIQVRGGTYKEYIVVPQKKTNIKLVGDGPRQTRIDGSHHGTTLDVYGDGFMAENIGLVNSAGLKASAAVTVRNEANNSIFFQCSIEGFQDTLWAVAGRQFYKNCDIYGTVDFIYGDASALFQDCNLYARYRPYVTFTAQSRDSPDEHTAFAFQQCHFTMAPEDAGMKSKVRATLGRPWRPYSTVAVIDSFIDSMVDPTGWEEMQGQPTDKVTYVEFNNYGPGSNTSGRVNWPGVRVLDDPNEAQRFTASVLLDADSWIPDKGVPYNS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0559 322 Pfam Pectinesterase 27 309 IPR000070 GO:0030599|GO:0042545
Lele38g0559 322 ProSiteProfiles Phosphotyrosine interaction domain (PID) profile. 189 230 IPR006020 -
Lele38g0559 322 SUPERFAMILY Pectin lyase-like 24 320 IPR011050 -
Lele38g0559 322 Gene3D - 23 322 IPR012334 -
Lele38g0559 322 FunFam Pectinesterase 4 23 322 - -
Lele38g0559 322 PANTHER PECTINESTERASE 27 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0559 Lele-ChrLele38 4699939 4703329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0559 29 320 Carbohydrate Esterase AT4G02300 39.216 5.19e-79 248