Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0558 ATGGCTCAAGACTCTGCTTTTGATCTTCTCTATGAATTGTTTTTCTTTTCTTCTTTCTTCTTCTCTTTCGTGGCCACCGAACTTCTCTGCGTTGAATATCCTTTTCTCTCTGCTCTGTTTTTCCAACATGAAGATGATCCCCATGTCCCATTAGCTATTGCCCAATATCCTCAACGCTCGCGGTTTCCAAAGAGAAAAAATTCTCCTTACCTCCTTTTGCCAGCATCATCATCATCATCACCACCATCATCTTCTTCTTCTTCTTGGACTATCCCAGAAACTAAGCATGTGAAGTCTTCAATTAAAACAGAGGAAGCCCTGCAGATTATATGTGAAATCTGTGCAGAAACAAAAAGAACTACCCAGATGATCAAGAACCAGACATGCGATCATTCATATTGCTCGGATTGTGTAACAAAACATGTGGCCATAAAAATCCAAGACACCATAGCAGCAGTTCCGTGTCCTGCTTTGGATTGTAAAACTGTTTATGATCTGGAAGCTTGTCGGCCATGGCTTCCAAAGGATTTACTTGAAAGGTGGGATCAAGCTCTATGTGAAGCTCTATTTCTGCAAGTGCCCAAATTTTACTGTCCCTTTAAGGATTGTTCGGCGATGATGCTGGTTGAGAATGAGGAAGATCAACGAGGTGCAGGGGCGACAGAGTGCCCTGTTTGCCATAGAATGTTCTGTCCAAGGTGTAATGTTCCATGGCATCCTGGAATTGACTGTGGAGAATATCAGAAACTGAATGAGAATGAAAGACAGAGAGAAGATCTTCTTGTGAGAAAGCTTGCTAAAGAAAAGAAATGGGGAAGGTGTCCTAAGTGTAAGTTCTATGTGGAGAAGATACATGGATGCTTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTATGCGTGTGGAAAAGAATGGAGTTCTACTCATGGAGGCTGCCAAAGAAATCAGATTATTTAA 960 0.4156 MAQDSAFDLLYELFFFSSFFFSFVATELLCVEYPFLSALFFQHEDDPHVPLAIAQYPQRSRFPKRKNSPYLLLPASSSSSPPSSSSSSWTIPETKHVKSSIKTEEALQIICEICAETKRTTQMIKNQTCDHSYCSDCVTKHVAIKIQDTIAAVPCPALDCKTVYDLEACRPWLPKDLLERWDQALCEALFLQVPKFYCPFKDCSAMMLVENEEDQRGAGATECPVCHRMFCPRCNVPWHPGIDCGEYQKLNENERQREDLLVRKLAKEKKWGRCPKCKFYVEKIHGCLHITCRCKYEFCYACGKEWSSTHGGCQRNQII 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0558 319 SUPERFAMILY RING/U-box 255 315 - -
Lele38g0558 319 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 78 315 IPR031127 GO:0004842|GO:0016567
Lele38g0558 319 SUPERFAMILY RING/U-box 109 188 - -
Lele38g0558 319 ProSitePatterns Zinc finger RING-type signature. 129 138 IPR017907 -
Lele38g0558 319 SMART ibrneu5 254 313 IPR002867 -
Lele38g0558 319 SMART ibrneu5 179 244 IPR002867 -
Lele38g0558 319 Gene3D - 242 318 - -
Lele38g0558 319 Pfam IBR domain, a half RING-finger domain 194 244 IPR002867 -
Lele38g0558 319 Pfam IBR domain, a half RING-finger domain 262 313 IPR002867 -
Lele38g0558 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 189 IPR013083 -
Lele38g0558 319 ProSiteProfiles Zinc finger RING-type profile. 111 156 IPR001841 -
Lele38g0558 319 FunFam RBR-type E3 ubiquitin transferase 246 317 - -
Lele38g0558 319 SUPERFAMILY RING/U-box 184 249 - -
Lele38g0558 319 FunFam RBR-type E3 ubiquitin transferase 106 192 - -
Lele38g0558 319 Pfam Zinc finger, C3HC4 type (RING finger) 111 156 IPR018957 GO:0046872
Lele38g0558 319 ProSiteProfiles TRIAD supradomain profile. 107 317 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0558 Lele-ChrLele38 4689038 4690489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0558 111 303 C3H Transcription Factor Family AT2G19610 28.500 7.73e-18 81.6