Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0552 ATGAAGCTCACGGTGAAGACTTTGAAAGGAAGAAATTTCGAAATCAGGGTCCAGCCCTCCGCCACTGTCATGGCAGTTAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTATCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTGTTGAAAGATGAGACTACACTAGCAGAGAACAATGTCTCTGAAGATGGATTCATTGTTGTAATGCTTAGCAAGAGTAAGACCTTCAGTTCAGCTGGGGCTTCATCCACTCAGCCTGCTAGTAATACAACTACAACTGTATCAGCATCAAATTCCTCTCCAGGGCCCGATCCACCAGTACAAACTCAGGCTGCAAACAACAGAACATCTTCCACAGATGCCACAATAGCGAATGTACCTACAGATACTTGTGGTGAGGCTGCTTCAAATTTAGTTGCTGGTACTAATCTTGAACAGACTATTCAACAAATTATGGACATGGGTGGTGGCAACTGGGACAGAGAGACAGTTAGTCGTGCTCTTCGGGCAGCTTTTAATAACCCAGAGCGTGCTGTAGATTACATGTATTCTGGAATTCCTGAAGTAACAGAAGTTGCTGAACCAGTTGCTCAATTTCCAGTTAGTCAGACAACTGAAACAAGTGAGGCTACTGCTAGAGCTGCCCCTGGAGCACCTAACTCATCTCCCTTAAACATGTTTCCTCAGGAGGCACTTGGTACTGATGCTGGACTTGGATCTCTTGACTTCCTTAGAAACAATCCCCAGTTTCAAGCATTGCGGTCAATGGTGCATTCGAATCCACAAATCTTGCAGCCTGTGCTTCAGGAGCTGGGAAAGCAGAATCCCAATCTTTTAAGATTGATTCAAGGACATCATTCTGAGTTTCTCCAGTTAATTAATGGACCAGTTGAAGGTTTTGAAGGGGACATATTTGACCAGCCTGAGCTAGACATGCCTCATTCTATCAATGTTACACCAGCTGAGCAGGAAGCAATTGGAAGGCTTGAGGCCATGGGATTTGATAGGTCCTCAGTTATAGAGGCATTTTTGGCATGTGACCGGGATGAGCAGTTAGCAGCCAACTATTTGTTGGAGAATGCTGGAGATTTTGAGGATTGA 1113 0.4429 MKLTVKTLKGRNFEIRVQPSATVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENNVSEDGFIVVMLSKSKTFSSAGASSTQPASNTTTTVSASNSSPGPDPPVQTQAANNRTSSTDATIANVPTDTCGEAASNLVAGTNLEQTIQQIMDMGGGNWDRETVSRALRAAFNNPERAVDYMYSGIPEVTEVAEPVAQFPVSQTTETSEATARAAPGAPNSSPLNMFPQEALGTDAGLGSLDFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPNLLRLIQGHHSEFLQLINGPVEGFEGDIFDQPELDMPHSINVTPAEQEAIGRLEAMGFDRSSVIEAFLACDRDEQLAANYLLENAGDFED 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0552 370 CDD UBA1_Rad23_plant 142 191 - -
Lele38g0552 370 SMART uba_6 148 188 IPR015940 -
Lele38g0552 370 SMART uba_6 326 363 IPR015940 -
Lele38g0552 370 SUPERFAMILY UBA-like 308 367 IPR009060 GO:0005515
Lele38g0552 370 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 324 364 IPR015940 -
Lele38g0552 370 FunFam UV excision repair protein RAD23 homolog 141 191 - -
Lele38g0552 370 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele38g0552 370 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
Lele38g0552 370 SMART CBM 243 286 IPR006636 -
Lele38g0552 370 Gene3D - 237 300 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele38g0552 370 FunFam UV excision repair protein RAD23 B 236 301 - -
Lele38g0552 370 Pfam XPC-binding domain 245 300 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele38g0552 370 PRINTS DNA repair protein Rad23 signature 320 336 IPR004806 GO:0006289
Lele38g0552 370 PRINTS DNA repair protein Rad23 signature 337 351 IPR004806 GO:0006289
Lele38g0552 370 PRINTS DNA repair protein Rad23 signature 352 367 IPR004806 GO:0006289
Lele38g0552 370 PRINTS DNA repair protein Rad23 signature 271 293 IPR004806 GO:0006289
Lele38g0552 370 FunFam UV excision repair protein RAD23 1 80 - -
Lele38g0552 370 Gene3D - 1 77 - -
Lele38g0552 370 Gene3D - 317 365 - -
Lele38g0552 370 MobiDBLite consensus disorder prediction 205 235 - -
Lele38g0552 370 TIGRFAM rad23: UV excision repair protein Rad23 1 369 IPR004806 GO:0006289
Lele38g0552 370 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele38g0552 370 FunFam UV excision repair protein RAD23 homolog 317 365 - -
Lele38g0552 370 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Lele38g0552 370 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Lele38g0552 370 CDD Ubl_Rad23 1 74 - -
Lele38g0552 370 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 359 - -
Lele38g0552 370 MobiDBLite consensus disorder prediction 205 219 - -
Lele38g0552 370 SUPERFAMILY XPC-binding domain 242 307 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele38g0552 370 MobiDBLite consensus disorder prediction 81 132 - -
Lele38g0552 370 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele38g0552 370 Gene3D - 141 191 - -
Lele38g0552 370 Pfam UBA/TS-N domain 326 361 IPR015940 -
Lele38g0552 370 Pfam UBA/TS-N domain 148 185 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0552 Lele-ChrLele38 4633092 4637875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0552 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 1.92e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0552 38 4633092 4637875 Lele39g0846 39 17450367 17454870 hybridization
Lele38g0552 38 4633092 4637875 Lele40g0525 40 4416751 4422324 hybridization