LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele38g0550	ATGACGGAAGCTTGCAAAAAAACCTCCGTTTTAGGTCAGTCATATAATTCTCTCTACGTCAATCCTCTCACTGAACTCAGGCACAGCCGTAGTTGCAGCGACAGTAGCAGCTTAGCTTCAAAATGTCACAAATGTGAAGATTTCACGCACAAAAGAAAAGTTTCAACTGACAATAAAGAGAATGTCGTCACGCCCAAGAAGAAGAAAGATGGAACTCGCTTTTGTGACAAGGAAAATGCAGTGCCTGCAAATGGGTCATCATTATCTTCTTCTTTGCCTAATAAACACTTCTCAAAGTCCAAGTCTTTGTCCACAGATAGGATTTTGAAGCCAAACTCACTTCAGTTCTGTATGCAAATGAACGAGCCTGAAAAGGCTTTTGGGTGCAAGATATGGGATAATGATGTATGTTCTGAAAATTTGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCAGATGCAGCCCCAGCTTCTTCCTGGTCAACCTTGCCCAATAAGTCTTTGATCTGTAGACCGTTGCCTATAGATATTGGAAAGTGTACATGCATCATTGTGAAGGAAGCAAAGCCAGAAGGACTATCTGGGGGCACTATATATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTGGCTTATCACAAGAGGAGGAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAACGGCTAACCTCCTGGGTTCTAAATACCAAATTTGGGATCAGGGATATCGTCATAATTCACATGATAAACAGCCAAAACCACCTCTTGCTGTTGTAATGTTTATACCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTACCCAAGCATCAATCTATGTCACTAAAGAACATAACCCAGGTACAACATATCAAAGGACTGCCCATAGATTGGGAGGGAAAGTTGGACAAAGTCCATCAATTGTTCTCAAAGGTTCCACTTTACAACAAGACTTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTCGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAATCGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTCTGCTTAAGTTTAGCTTCCATTGATACAAAGCTCTGTTGCTCTGTGTAG	1269	0.4074	MTEACKKTSVLGQSYNSLYVNPLTELRHSRSCSDSSSLASKCHKCEDFTHKRKVSTDNKENVVTPKKKKDGTRFCDKENAVPANGSSLSSSLPNKHFSKSKSLSTDRILKPNSLQFCMQMNEPEKAFGCKIWDNDVCSENLSSLKIWDFSDSDAAPASSWSTLPNKSLICRPLPIDIGKCTCIIVKEAKPEGLSGGTIYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLLGSKYQIWDQGYRHNSHDKQPKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKNITQVQHIKGLPIDWEGKLDKVHQLFSKVPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLEENGKQTILQLGRIGKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCSV	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele38g0550	422	PRINTS	Tubby superfamily signature	399	421	IPR000007	-
	Lele38g0550	422	PRINTS	Tubby superfamily signature	378	397	IPR000007	-
	Lele38g0550	422	PRINTS	Tubby superfamily signature	245	269	IPR000007	-
	Lele38g0550	422	PRINTS	Tubby superfamily signature	335	352	IPR000007	-
	Lele38g0550	422	Pfam	Tub family	171	416	IPR000007	-
	Lele38g0550	422	Gene3D	Tubby Protein; Chain A	162	421	IPR025659	-
	Lele38g0550	422	PANTHER	TUBBY-RELATED	31	419	-	-
	Lele38g0550	422	SUPERFAMILY	Tubby C-terminal domain-like	157	420	IPR025659	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele38g0550	Lele-ChrLele38	4620984	4623479	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele38g0550	57	315	TUB Transcription Factor Family	AT1G16070	54.753	1.43e-90	274

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Lele38g0550		Tub	1.5e-39	CL0395