Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0540 ATGGGCACTCCCTCATCCCAATTGGTGAAGCTGTCGTCGTCGTTGGCCCTCTTCTTCTTCGTCCTTGCTTCTCTCTCCGCCGTCTCCGCCACCGACCACATCGTTGGTGCCAACCGTGGCTGGAACCCCGGCATTAACTACACTCTCTGGGCCAACAACCAGACTTTCTATGTCGGCGACCTCATCTCATTCAGGTACGTGAAAAACCAGTACAACGTGTTTGAGGTGAACCAAACTGGGTATGACAATTGCACTACAGAGGGAGATATTGGGAATTGGACAAAAGGCAAAGACTTCATACCACTGAATAAGGCTAAGAGGTATTACTTCATTGGTGGTAATGGCCAATGCTTCAATGGCATGAAAGTCTCTGTTCTTGTTCATCCTCTTCCTCCTCCTCCTTCTTCTGCTGTTGCTGATAAGCATGAAACCCCATCCGCTGCTGCTGCTCCAATGCTTTTCTCTGGGGGATTCTGGTTTTCTATGCTCATGTCTTCTTCTGCTTTGGTTTGGTTTGGATGTGGTTGGATCTAG 534 0.4888 MGTPSSQLVKLSSSLALFFFVLASLSAVSATDHIVGANRGWNPGINYTLWANNQTFYVGDLISFRYVKNQYNVFEVNQTGYDNCTTEGDIGNWTKGKDFIPLNKAKRYYFIGGNGQCFNGMKVSVLVHPLPPPPSSAVADKHETPSAAAAPMLFSGGFWFSMLMSSSALVWFGCGWI 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0540 177 FunFam Lamin-like protein 29 130 - -
Lele38g0540 177 Pfam Plastocyanin-like domain 41 121 IPR003245 GO:0009055
Lele38g0540 177 ProSiteProfiles Phytocyanin domain profile. 31 129 IPR003245 GO:0009055
Lele38g0540 177 PANTHER BLUE COPPER PROTEIN 28 139 IPR039391 GO:0009055
Lele38g0540 177 Gene3D - 29 130 IPR008972 -
Lele38g0540 177 SUPERFAMILY Cupredoxins 30 128 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0540 Lele-ChrLele38 4510278 4511427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0540 6 137 Phytocyanin Superfamily AT5G15350 44.030 1.45e-40 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0540 38 4510278 4511427 Lele39g0858 39 17522135 17523250 hybridization
Lele38g0540 38 4510278 4511427 Lele40g0510 40 4312432 4313578 hybridization