Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0532 ATGGAGGAGGAGAGTCGGCATCGAGGTTTTGCTTTACTCATGCAATTGGAAGTTGGTTGTTGTTTCATCTTATTCCTCAATCTGATGCAGGTTCTCTGAGAGAAACAACGGAAAACCAAAACTTCCAAGCCATCTCTCTCTCTCTCTCTAACTTGGTGTTGTGTGGCGTTTGGAGAGATGGATAATAATGAGGAGATTCCTTCAGCACCCACAACACCAGGGACTCCTGGTGGACCTCTTTTTGGAGGTTTCAAGTCTGATCAGAGAAGTAATGAGAATGGCTATGCAAGGAAGAAATCGCTTCTCAAGAGTTGTAAGTGTTTCAGTGTTGAAGAATGGAATTTAGAAGAGGGAGCTTTGCCCACTGTCTCTTGCTCTTTGCCACCCCCTCCCATCCCTCTTGCAAGAAAGGTAGGAGCTGAGTTCGTAGGCACTCTGATTCTGATGTTTGCTGGCACAGCCGCTGCTATAGTGAACCAGAAGACACAAGGCGCCGAGACTCTCATCGGCTGCGCCGCCACCACTGGTCTCACTGTCATGATCGTTATCCTCTCCACCGGCCACATCTCCGGCGCTCATCTCAACCCCGCCGTCACCATCTCCTTTGCTGCACTGAAGCATTTCCCATGGAAACATGTTCCTGTGTACATTGGAGCACAAATAATGGCGTCAATATGTGCAGCATTTGCCCTGAAGGGTATATTTAATCCCTTCATGAGTGGAGGAGTTACTGTTCCTTCAGTAGGATATGGCCCAGCCTTTGCTTTGGAGTTCATCATCAGCTTTAATCTCATGTTTGTCGTCACGGCAGTAGCCACCGACACAAGAGCCGTTGGAGAGCTTGCGGGAATCGCAGTGGGAGCCACTGTCATGCTCAACATCCTCATCTCAGGGCCAGCAACAGGAGGGTCAATGAACCCTGTGAGAACACTTGGGCCAGCAATAGCAGCAAATAACTACAAAGGCATATGGCTGTATCTGATAGCTCCCATACTTGGAGCTCTGAGTGGAGCAGGCACTTACACTTTAGTGAAGCTCACTGATGAACAAGAAGAAGAGGCCAAGGCTACTACTACTGCCTCTGCCCCTGGTAGCTTCAGAAGATGA 1107 0.4896 MEEESRHRGFALLMQLEVGCCFILFLNLMQVLXEKQRKTKTSKPSLSLSLTWCCVAFGEMDNNEEIPSAPTTPGTPGGPLFGGFKSDQRSNENGYARKKSLLKSCKCFSVEEWNLEEGALPTVSCSLPPPPIPLARKVGAEFVGTLILMFAGTAAAIVNQKTQGAETLIGCAATTGLTVMIVILSTGHISGAHLNPAVTISFAALKHFPWKHVPVYIGAQIMASICAAFALKGIFNPFMSGGVTVPSVGYGPAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILISGPATGGSMNPVRTLGPAIAANNYKGIWLYLIAPILGALSGAGTYTLVKLTDEQEEEAKATTTASAPGSFRR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0532 368 Pfam Major intrinsic protein 135 341 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 SUPERFAMILY Aquaporin-like 133 350 IPR023271 -
Lele38g0532 368 FunFam Aquaporin NIP2-1 124 356 - -
Lele38g0532 368 PRINTS Major intrinsic protein family signature 287 309 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 PRINTS Major intrinsic protein family signature 175 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 PRINTS Major intrinsic protein family signature 256 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 PRINTS Major intrinsic protein family signature 212 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 PRINTS Major intrinsic protein family signature 324 344 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 CDD MIP 136 344 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g0532 368 Gene3D Glycerol uptake facilitator protein. 131 359 IPR023271 -
Lele38g0532 368 MobiDBLite consensus disorder prediction 64 91 - -
Lele38g0532 368 ProSitePatterns MIP family signature. 193 201 IPR022357 -
Lele38g0532 368 PANTHER AQUAPORIN NIP2-1 100 350 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0532 Lele-ChrLele38 4455359 4460263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0532 62 368 Major Intrinsic Protein MIP AT1G80760 76.282 8.55e-165 461