Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0521 ATGTTTCGTGTCCGAGGAAGCTGTGCCCGATTCCGAGGGTCGTTCAAGCTTCTTCGAACCGCATCATTCTGTAGCAAGGCTAAAAACTCTTCCAGCAATTCCACGAAGAACTACAAGATCATTCGCGATGAAAGGTATCGGCAGCTGGAAAATCTTGACTTCATGACTGCGGCAAAGATCCTTTTTACCGACCCTCCAAAGGAAAAGAAATTTGGGCTTGATTTCCATCTTGTGCAACTTTTCTTTGCCTGCTTGCCTTCTTTAGCTGTATATTTGGTGGCTCAATATGCTCGTTATGATATGAAAATAATGGAGGCGGAAGTAGAGCAGAAAAGGAAGATAAGGGACGAACAGGAAGCAAAAGAAAGAGAAGAATTAGAGAAGTTAAAACCCCCTCCCCTTGATCCACCCCCGCTTCAGGAGGTGAAAGTGAGACTTGACAAACTTGAGGAGGCTGTGAAGGAAATTGTGTCTGAAACAAAGAAACAATCAGGCAGCGACCTCCCTGAAGATCAAGTGGAAGATGATGAGAAAAAACATGCCAAGTCTTCTTCTACAGAAAGCGACAAAAACAATTCTTTACCACCAGATAAAGCTGTGGAGAAGGATAATAATCTTGGTAAGCCTGTTAAACCAAACCCAGAATCAGGCCAAGAGAGTCCAAAGAATGAACTGGCAGCTCCAAAATCTTCTGTGGATGACCAGAAAAGCCAAGGTAAAGGTGGTGGTAGAAGTAGTGTAGTTTTTGACATGCTGGCTGATGACAAGACTGCTGACAAGTCCACTAGGACTGGGAATCCACATGAGCATTTTTTTGCTGTGGTGCGTCTTAGACCAATGGATCCATCTGACGGTTCCTATGGAGAGATGGCATTCAGACGTGTTTGCCGCTCAAACTTCCACAAGAAGACAAAGATAATGGATGGTTGCAAAAAATCCTCCATATCGGCCCAGTCATACAATTCTCTCTATGTCAATCCCCTCACTGAGCTCAGGCATAGCCGTAGCTGTAGCTGCGACTATGGCCGTTTAGCTAACAAAGGTGACGACTTTGATTTCGCTCACCGGGGCATGAAAATCTTTATGGATAACAAAGAGAATGCGACGCCTAACAAGAAAGAAATTGTAGTTTCTTCTTCTGGTGATGATGACAAGGAAAACGCAGTGTCTAAGAAGTTCTCGAACTCTAGGTCTTTGTCTACTGATAGGATCTTGAAGCCTACTTCGCTTCAGTTCTGCACGAAAATGAATGATTATTCTGAAAAGGCGTTTGGGTCTAAGATATGGGATCGTTTTGATTCGGAGAATTCGAGCTCTATGAATGTTTGGGACTTTTCTGATTCTGAGGCAGCTCCAGCTTCATCGTGGTCAACTCTGCCAAACAAGTCTTTGATCTGTAGACCATTGCCCGTTGATATTGGAAGATGTACATGTGTTATTGTGAAGGAAGCATCGCCAGAAGGACTATCTGGGGGCACATTTTTTTCTCTTTATACCTATGAAGGCAAAGGACGACAGAATAGGAAATTGGCTGTGGCTTACCATAAGAGGCGAAATGGGAGGTCTCAATTCACCATAGCTCAGAATGTAAAAGGACTTTTGTCCAATTCAGATGATAGTTTTCTTGGAACAGTGATAGCCAACTTCATGGGTTCAAAATACCACATATGGGATCAGGGATACCGCCATGATTGCCGGGGTAAACAGCCAAAACCGCCTCTTGCTGTGGTGGCATTCATACCAACTATAGCAACATGTACAGGAAGTTACAGAAGCATGAGGGCATATGTACCCAAACATCAATCTATGTCACTGAAGAACACAAATCAGGTACAACATATCAAAGGACTGCCAACAGATTGGGAGGAAAAGGTGGACAACGTCCATCAACTATTCTCAAGAGTACCAATTTACAACAAGATTTCAAAGCAGTTTGAACTGGACTTCAGAGATAAAGGAAGAACAGGACTTCAGATCCAGGCATCAAATAAAAATTTCCAGCTGAGTTTGGAGGAGAATGGGAGGCAAACAATTCTGCAGTTAGGAAGAGTGGCAAAATCAAAGTTTGTTTTGGATTACAGATATCCTCTGACAGGTTACCAAGCATTCTGCATATGCTTGGCTTCCATTGATACAAAGCTTTGCTGCACAGTGTAG 2157 0.4325 MFRVRGSCARFRGSFKLLRTASFCSKAKNSSSNSTKNYKIIRDERYRQLENLDFMTAAKILFTDPPKEKKFGLDFHLVQLFFACLPSLAVYLVAQYARYDMKIMEAEVEQKRKIRDEQEAKEREELEKLKPPPLDPPPLQEVKVRLDKLEEAVKEIVSETKKQSGSDLPEDQVEDDEKKHAKSSSTESDKNNSLPPDKAVEKDNNLGKPVKPNPESGQESPKNELAAPKSSVDDQKSQGKGGGRSSVVFDMLADDKTADKSTRTGNPHEHFFAVVRLRPMDPSDGSYGEMAFRRVCRSNFHKKTKIMDGCKKSSISAQSYNSLYVNPLTELRHSRSCSCDYGRLANKGDDFDFAHRGMKIFMDNKENATPNKKEIVVSSSGDDDKENAVSKKFSNSRSLSTDRILKPTSLQFCTKMNDYSEKAFGSKIWDRFDSENSSSMNVWDFSDSEAAPASSWSTLPNKSLICRPLPVDIGRCTCVIVKEASPEGLSGGTFFSLYTYEGKGRQNRKLAVAYHKRRNGRSQFTIAQNVKGLLSNSDDSFLGTVIANFMGSKYHIWDQGYRHDCRGKQPKPPLAVVAFIPTIATCTGSYRSMRAYVPKHQSMSLKNTNQVQHIKGLPTDWEEKVDNVHQLFSRVPIYNKISKQFELDFRDKGRTGLQIQASNKNFQLSLEENGRQTILQLGRVAKSKFVLDYRYPLTGYQAFCICLASIDTKLCCTV 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0521 718 PRINTS Tubby superfamily signature 654 670 IPR000007 -
Lele38g0521 718 PRINTS Tubby superfamily signature 695 717 IPR000007 -
Lele38g0521 718 PRINTS Tubby superfamily signature 541 565 IPR000007 -
Lele38g0521 718 PRINTS Tubby superfamily signature 674 693 IPR000007 -
Lele38g0521 718 Coils Coil 139 159 - -
Lele38g0521 718 MobiDBLite consensus disorder prediction 157 247 - -
Lele38g0521 718 Pfam Tub family 467 712 IPR000007 -
Lele38g0521 718 SUPERFAMILY Tubby C-terminal domain-like 453 717 IPR025659 -
Lele38g0521 718 Coils Coil 101 127 - -
Lele38g0521 718 Gene3D Tubby Protein; Chain A 458 717 IPR025659 -
Lele38g0521 718 MobiDBLite consensus disorder prediction 216 242 - -
Lele38g0521 718 MobiDBLite consensus disorder prediction 120 140 - -
Lele38g0521 718 MobiDBLite consensus disorder prediction 157 186 - -
Lele38g0521 718 PANTHER F23A5.5 1 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0521 Lele-ChrLele38 4284417 4293321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0521 363 611 TUB Transcription Factor Family AT1G16070 54.615 1.49e-90 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele38g0521 Tub 1.7e-39 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0521 38 4284417 4293321 Lele38g0521 38 4284417 4293321 ECH
Lele38g0521 38 4284417 4293321 Lele39g0882 39 17757681 17765190 hybridization
Lele38g0521 38 4284417 4293321 Lele40g0492 40 4101605 4104018 hybridization