Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0519 ATGGGCAGACCCCAGCAACGGTATCGCGGAGTACGGCAGAGGCATTGGGGCTCCTGGGTCTCCGAGATTCGTCACCCCATCTTGAAGACGAGAATATGGCTGGGGACATTCGAAACGGCAGAAGATGCAGCAAGAGCCTATGATGAAGCAGCCAAGCTCATGTGTGGCCCTCAAGCCATAACCAATAATCTCTCTCCTTCTTCTTCTTCCTCTAGCTTTCTCTCTCCATCTCTCACGGCCAAGCTTCTTCACAATTGCCACATGGCTTCTCTTTCCCTTCAAATGAACAAACAGCAGTCCCAGAAACATCCTCACCATCATAACCAAAAACAGCACACACAGACCTCTGTCATTCATCCTTGCTCCGGCAATGCCGCCGTCACTGTACCAAGCAATGAGACCGGGTTCGTGTGGCCGGAGAATATTAAACATGAGGAGGAGGAGGAGCAACCACAGTTTCAGCTGCAAGTGCTTGAAGATGATGACATTGAGCAGATGATTCAAGAGTTACTTCATTATGGCTCATTTGACTTTTGTTCTCCTTCTTCGACTTCTAATAACCCTAATAATCCCACCATCTCTTCATAA 588 0.483 MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAAKLMCGPQAITNNLSPSSSSSSFLSPSLTAKLLHNCHMASLSLQMNKQQSQKHPHHHNQKQHTQTSVIHPCSGNAAVTVPSNETGFVWPENIKHEEEEEQPQFQLQVLEDDDIEQMIQELLHYGSFDFCSPSSTSNNPNNPTISS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0519 195 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lele38g0519 195 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lele38g0519 195 Gene3D AP2/ERF domain 6 64 IPR036955 GO:0003700|GO:0006355
Lele38g0519 195 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lele38g0519 195 MobiDBLite consensus disorder prediction 95 116 - -
Lele38g0519 195 SMART rav1_2 7 68 IPR001471 GO:0003700|GO:0006355
Lele38g0519 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 139 - -
Lele38g0519 195 ProSiteProfiles AP2/ERF domain profile. 7 65 IPR001471 GO:0003700|GO:0006355
Lele38g0519 195 SUPERFAMILY DNA-binding domain 7 62 IPR016177 GO:0003677
Lele38g0519 195 CDD AP2 6 62 IPR001471 GO:0003700|GO:0006355
Lele38g0519 195 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0519 Lele-ChrLele38 4249820 4250543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0519 1 180 AP2-EREBP Transcription Factor Family AT5G25190 54.054 1.02e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele38g0519 AP2 1.4e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0519 38 4249820 4250543 Lele40g0489 40 4070954 4071709 hybridization