Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0518 ATGGCAGGAGGCAGCCTCGACGAGATCAAGAAGGAGAATGTCGACCTCGAGCGAGTACCGATAGATGAAGAAAGCAAGCTTCTCAAATTCTTGGGATTTATGTGGAATCCTCTCTCATGGGTCATGGAAGCAGCTGCTATCATGGCTATCGCTTTGGCCAATGGAGGGGGCCAACCGCCAGATTGGCAAGATTTTGTGGGAATTGTGGCATTGCTCATCATTAACTCAACAATTAGTTTCATTGAAGAAAACAATGCAGGGAATGCTGCAGCAGCACTTATGGCAAGCCTTGCGCTAAAAACTAAGGTTTTGAGGGATGGAAAATGGACTGAGCAGGATGCATCTGTGTTGGTACCTGGAGACATAATCAGCATCAAATTAGGAGACATTATCCCTGCGGATGCTCGTCTCTTGGAAGGAGATCCTTTAAAGATTGATCAGTCTGCACTTACTGGCGAGTCCTTGCCGGTTACAAAGAACTCGTCTGATGAAGTCTTCTCAGGATCGACTGTGAAGCAAGGAGAGATCGAGGCTGTTGTGATTGCTACTGGGGTTCACACCTTCTTTGGTAAAGCTGCTCACTTGGTTGATAGCACTAACCAAGTAGGCCACTTTCAAAAGGTGTTGACTGCCATTGGTAACTTCTGCATTTGCACAATAGCAATTGGGATGATTGTAGAGATAGTCGTGATGTACCCGATTCAACATCGTAGATATAGGAGTGGAATCGACAACCTCTTGGTGCTTCTTATCGGAGGAATTCCGATTGCCATGCCCACAGTCTTATCAGTAACAATGGCTATTGGTTCTCATAGGTTGTCACAGCAAGGTGCTATCACTAAGAGGATGACAGCCATTGAGGAGCTGGCTGGGATGGATGTTCTATGCAGTGACAAGACCGGCACCTTAACACTCAACAAGCTCACAGTTGACAAGACCTTGGTTGAGGTCTTTGTAAAAGATATTGACAAGGACACTTTGATATTGCTTGGAGCTAGAGCCTCAAGGGTGGAGAATCAAGATGCTATTGATGCTTGTATTGTTGGAATGTTGGGTGACCCGAAGGAGGCCAGAGATGGCATCACAGAGGTGCATTTCCTTCCCTTTAATCCAGTGGACAAGCGTACGGCCATAACATACGTTGACTCTGCAGGCAATTGGCATAGAGTAAGCAAAGGAGCACCAGAACAGATTGTAGAACTCTGCAATGTCAAAGAAGATATAAAGAAAAAAGTTCATTCCATTATTGATAAGTTTGCTGATCGTGGTCTGCGTGCTCTTGCTGTTGCAAGACAAGAAGTGCCAGAAAAGAACAAGGAGAGTCCAGGAGCACCATGGCAGTTTGTGGGTCTCTTACCACTTTTCGATCCTCCAAGGCATGACAGTGCAGAGACCATAAAACGTGCTCTCCATCTTGGAGTGAATGTGAAGATGATCACTGGTGATCAACTGGCTATCGGCAAGGAGACTGGCCGTAGGCTTGGAATGGGAAGCAACATGTATCCTTCTTCCTCCCTTCTTGGTGAACACAAGGATGAGTCTATCGCTGCACTTCCAATTGATGAACTTATTGAGAAGGCTGATGGCTTTGCCGGTGTCTTTCCTGAGCACAAATATGAGATAGTGAAGAGACTACAAGATAGGAAACACATATGCGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCATTGAAGAAGGCAGATATTGGGATTGCAGTGGCTGATGCAACCGATGCAGCTCGAAATGCATCTGACATAGTTTTGACAGAACCTGGTTTAAGTGTGATTATCAGTGCAGTGTTGACAAGTCGTGCCATTTTCCAAAGAATGAAGAACTACACCATCTATGCAGTTTCTATCACAATCCGAATTGTGTTGGGCTTTCTCTTGCTTGCTCTTATCTGGAAATTTGATTTCTCACCTTTTATGGTTCTGATCATTGCCATTCTAAATGATGGGACCATCATGACCATTTCAAAGGATAGAGTCAAGCCATCACCTTCTCCAGATTCATGGAAACTCAATGAGATTTTCGCCACTGGAGTAGTACTTGGATCCTACATGGCTGTTATGACTGTTGTCTTCTTCTGGGCCGCTCATGATTCGGATTTCTTCACAGAAAAATTCGGTGTTAGATCAATTAGAGAAAACGATAAAGCATTAACATCAGCTGTTTATCTTCAAGTGAGTATTGTGAGTCAGGCTCTCATCTTCGTTACTCGGTCAAGAAGCTGGTCTTATGTTGAACGCCCTGGTTTGTTGCTTCTGGGAGCCTTTCTCATAGCACAATTGATTGCCACTATCATAGCGGCGTATGCAAACTGGGGATTTGCAGATATAGAAGGAATCGGATGGGGCTGGGCAGGAGTAATATGGCTTTACAACATTGTCTTCTACATTCCTTTGGATTTACTAAAGTTCATAATCCGATATGCATTGAGTGGGAAAGCATGGAACAATATTACAGAGACCAGGACGGCTTTCACAACGAAGAAGGATTACGGAAGAGGAGAACGAGAAGCTCAATGGGCCACAGCTCAACGTACCCTCCATGGACTCAATCCTCCTCAAGCCGAACAAATCCTCAATGAAATGAACTCCCATGGCGAATTATCAGAACTCGCAGAACAAGCTAAGAAACGCGCTGAAGTTGCAAGGTTGAGGGAGCTTCACACATTGAAGGGTCATGTGGAATCGGTGGTGAAACTGAAGGGGCTTGACATAGATACGATTCAGCAACACTACACGGTTTGA 2757 0.4494 MAGGSLDEIKKENVDLERVPIDEESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIVALLIINSTISFIEENNAGNAAAALMASLALKTKVLRDGKWTEQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNSSDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICTIAIGMIVEIVVMYPIQHRRYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLTVDKTLVEVFVKDIDKDTLILLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYVDSAGNWHRVSKGAPEQIVELCNVKEDIKKKVHSIIDKFADRGLRALAVARQEVPEKNKESPGAPWQFVGLLPLFDPPRHDSAETIKRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARNASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPSPDSWKLNEIFATGVVLGSYMAVMTVVFFWAAHDSDFFTEKFGVRSIRENDKALTSAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLLGAFLIAQLIATIIAAYANWGFADIEGIGWGWAGVIWLYNIVFYIPLDLLKFIIRYALSGKAWNNITETRTAFTTKKDYGRGEREAQWATAQRTLHGLNPPQAEQILNEMNSHGELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0518 918 PANTHER CALCIUM-TRANSPORTING ATPASE 21 850 - -
Lele38g0518 918 SFLD p-type atpase 278 606 IPR044492 -
Lele38g0518 918 FunFam Plasma membrane ATPase 308 455 - -
Lele38g0518 918 CDD P-type_ATPase_H 18 808 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele38g0518 918 Pfam E1-E2 ATPase 99 275 - -
Lele38g0518 918 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 68 315 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele38g0518 918 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 530 641 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele38g0518 918 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 17 773 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lele38g0518 918 PRINTS H+-transporting ATPase (proton pump) signature 527 543 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele38g0518 918 PRINTS H+-transporting ATPase (proton pump) signature 555 571 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele38g0518 918 PRINTS H+-transporting ATPase (proton pump) signature 586 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele38g0518 918 PRINTS H+-transporting ATPase (proton pump) signature 727 748 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele38g0518 918 PRINTS H+-transporting ATPase (proton pump) signature 412 430 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele38g0518 918 Gene3D - 308 455 IPR023299 GO:0000166
Lele38g0518 918 Pfam haloacid dehalogenase-like hydrolase 292 569 - -
Lele38g0518 918 FunFam ATPase 4 plasma membrane-type 540 782 - -
Lele38g0518 918 SUPERFAMILY Calcium ATPase, transduction domain A 100 196 IPR008250 -
Lele38g0518 918 Gene3D - 99 183 - -
Lele38g0518 918 ProSitePatterns E1-E2 ATPases phosphorylation site. 298 304 IPR018303 -
Lele38g0518 918 Gene3D - 61 782 - -
Lele38g0518 918 SUPERFAMILY Calcium ATPase, transmembrane domain M 24 814 IPR023298 -
Lele38g0518 918 FunFam Plasma membrane ATPase 99 183 - -
Lele38g0518 918 SFLD C1.7: P-type atpase like 278 606 - -
Lele38g0518 918 Gene3D - 867 918 - -
Lele38g0518 918 Gene3D - 293 592 IPR023214 -
Lele38g0518 918 PRINTS P-type cation-transporting ATPase superfamily signature 146 160 - -
Lele38g0518 918 PRINTS P-type cation-transporting ATPase superfamily signature 296 310 - -
Lele38g0518 918 PRINTS P-type cation-transporting ATPase superfamily signature 555 574 - -
Lele38g0518 918 PRINTS P-type cation-transporting ATPase superfamily signature 578 590 - -
Lele38g0518 918 PRINTS P-type cation-transporting ATPase superfamily signature 450 461 - -
Lele38g0518 918 PRINTS P-type cation-transporting ATPase superfamily signature 472 482 - -
Lele38g0518 918 FunFam Plasma membrane ATPase 448 603 - -
Lele38g0518 918 SUPERFAMILY HAD-like 292 602 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0518 Lele-ChrLele38 4235733 4239944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0518 5 918 Primary Pumps ATPases AT3G42640 80.359 0.0 1552