Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0502 ATGTTAACTAGTTCGAGTGCAGAGATAGCTGGACCATCGTCGGACGAAATTACACGGCCACCAGCTATGGCGGTTTCAGGCGAGCGGAGTGAATCTTCATCCTCGTCCTTCTCCTTGTCCAATTTAACTCAGGCCTTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTAGAGGCGTCATGCATCTCTATCGCGAGGATCCCACTTCCTCATCGCCTTCTGATCTTCCTGTTGGACGGAAACCACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCAGATTTTTGCCAGTTCTGTGGTTCATTTATTCAGCATATCTTAGAGATGCGGATTGTCAGAAATGATGGTATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACAGATGGTTTCTACAAGCATTATAATGGGCGTCGTTTCTCATCTATGGAGGTGGAAGTTTGCTGTGTTCTCTTCACATTGGATGTGCAGTACACTGGCCTGATCGAACATGCACAGGCATCTAATGCTAGCTCAACTGAACAGCCTTCATGTCCAGTGTGCTTAGAGAGATTGGATCAAGATACAAGTGGAATTCTTACAACCATTTGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCATCTTGTCCTGTATGCCGGTATTGTCAGCAGCAGGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAAAACCTCAGCATATGCGTTATTTGTGGGTTTGTTGGCTGTGGAAAATACAAAGCAGAGCATGCCAAAATACACTGGAAAGACACACAGCATTGCTACTTCCAAGAAGTGGAAACACAACGAGTATGGGATTATGTGAAAGACAACTACGTTCATCGACTAATCCTGTCCAAAACTGATGGGAAGTTGGTTGAGTTAAACTCTCACTGTGAGCATACAGGCAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATGCTATGAATGAGGCTATACATAACAGTAAAGTCGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCCACACAACTTGAAAACCAAAAATTATACTTTGAGTCCTTACTACAAGAAGTAAAAGAAGAAACTGAAAGAGAAATTTCTAAAGCTGTTGAGAAGGCCGTTGCTGTTAAACTGCAGAAGCTGCAGTCCAAGCTTGACAGATGTTATAAGGAGAAGAAATTTTTGGATGATCTAAATGAGAATCTGCTGAAAAATCAGGAGATATGGAAAGCCAAGATACTTGAGATTGAAGAAAGGGAGAAGAAGGCCATAAAACTCAAGGATGATAAAGTAAGGGCCCTGGAAGAGCAGTTAAGCGATCTCATGATTTGTCTTGAAAATGGGAAGACAGCTGACCAACTGTCCGGGTCAGACGAAGTAAAAGACGAAACTGCTGTCCCCACTTAA 1440 0.4229 MLTSSSAEIAGPSSDEITRPPAMAVSGERSESSSSSFSLSNLTQAFPFSSGNPRIEETRGVMHLYREDPTSSSPSDLPVGRKPLVCVLGVPNHMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNGRRFSSMEVEVCCVLFTLDVQYTGLIEHAQASNASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLSICVICGFVGCGKYKAEHAKIHWKDTQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHTGNGCGSCSCEDNAMNEAIHNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETEREISKAVEKAVAVKLQKLQSKLDRCYKEKKFLDDLNENLLKNQEIWKAKILEIEEREKKAIKLKDDKVRALEEQLSDLMICLENGKTADQLSGSDEVKDETAVPT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0502 479 CDD RING-H2_BRAP2 185 228 - -
Lele38g0502 479 ProSiteProfiles Zinc finger UBP-type profile. 221 314 IPR001607 GO:0008270
Lele38g0502 479 SMART ring_2 187 226 IPR001841 -
Lele38g0502 479 Coils Coil 352 448 - -
Lele38g0502 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 305 IPR013083 -
Lele38g0502 479 SMART Zf_UBP_1 237 286 IPR001607 GO:0008270
Lele38g0502 479 Pfam BRCA1-associated protein 2 78 174 IPR011422 -
Lele38g0502 479 ProSiteProfiles Zinc finger RING-type profile. 187 227 IPR001841 -
Lele38g0502 479 SUPERFAMILY RING/U-box 203 302 - -
Lele38g0502 479 CDD RRM_BRAP2_like 85 166 - -
Lele38g0502 479 MobiDBLite consensus disorder prediction 1 39 - -
Lele38g0502 479 PANTHER BRCA1-ASSOCIATED PROTEIN 26 478 - -
Lele38g0502 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 229 IPR013083 -
Lele38g0502 479 Pfam Zn-finger in ubiquitin-hydrolases and other protein 238 297 IPR001607 GO:0008270
Lele38g0502 479 SUPERFAMILY RING/U-box 179 227 - -
Lele38g0502 479 Pfam Ring finger domain 186 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0502 Lele-ChrLele38 4111271 4115183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0502 183 227 C3H Transcription Factor Family AT1G72220 48.936 1.60e-07 51.6