Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0479 ATGAAAGATCATTCTTGGCCTGCTTTGCCAATCCATGCCCCTTCTAATGTTCAATTCTTTTTGCTTTCAAGGATTATACCGGCCGTTATGGAGGTTGATACACTTGTTAGTCCTATCAATATCAATGAGCAATCTGACCTGGAAACACATCACGGCAAGTGTAGAAGAAAGAAGTCTATTGTGTGGGAACACTTCACAGTAAAAGCTGTTGGAGATGGCATTACTAGGGCTTACTGCAAACAGTGTAAAAAATCATTTGCTTATATTTCTGGTTCAAAAGTTTCTGGCACAAGTCATCTGAAACGACACATTTCCTTGGGAATCTGTCCAGCAAGTCGACAGAAAAATCTGCAAAGCCCACATTTAAAAAACTGCAGTTCTGAAGATGCTTCTCGACCAAAGAAACGTGTAAGAGCAACCCCTGGTTTGGGTGTAATACCATTTGATCAGGAACGTTGCAACAATGAGATGGCAAAAATGATAATTGCACAAGATTATCCCCTTCAAATTGTGGAACACAAGGGCTTCATGGATTTTGTACGGACTCTTCAGCCCCAGTTCAATTCACTAAGCTCTACTGATGTTCATGGGGATTGCATCTCTATGTACCACAGTGAGAAGCAAAACCTCTTGAATCTTGTCAGACAAATTCCTGGACGGGTCAACCTGACCTTGGATTTATGGACTTCAAATCAGACAGTGGGCTATGCTTTTCTTCGCGGACATTTCATTGACGGTGATTGGAATGTACATCATCCTATTCTTAATGTGATAATGGTGCCATTTCCTGATTCTGAGGATTCCTATAATAAAACGATTGTGACCTGCCTAACTGATTGGCAGTTGGAAGGTCGGGTTTTTACACTTGCACTTGATCAGTCCTCGAATGAGACTCTGATGGGAAATCTTAGAGGACTCCTTTCTGCTAGGAATCCTGTGATTTTCAATGGGCAGTTACTAAGCAGGAACTGTTTTGCTCGGCTTCTTAGTCGTCTTGCCCTAGATGCATTATGGGCAATGAGAGAAACCATCAGTAAAGTTCGAGAGAGTGTGAAGTTGGTGAAAATTTCAAATTCTAACGAAGCAAAGTTCATTAAGCTGAAGCAACAACTCCAAGTCCCTAGTACAAAAGACCTTTTTATTGACAATCAAACTAAATGGGACACAACGTACCATATGTTGGTCGCTGCCTGTGAATTAAAGGAAGTCTTTGCCTGCTTCGAGACCCCTGGCCGTGATTATGGAATGACTTTGTCTATGGATGATTGGAAGCGAGTAGAAATTCTCTGCACGTATTTGAAGCAGCTACATGATGCAGCTAACCTTCTAACTTGCCAACCATATCCAACTGCAAATTTATTTTTCTCTGTTGTTTCAAATCTTCTGGTGGAACTGACTCATGCAGCTTTCAGTCAGGATCCTTTCCTCAGTAATTTGATTAGGCCTTTGCAAGAGAGTTTTGATCAATACTGGAGAGAAAGTTGCCTCGTCTTGGCGGCTGCTGTAGCCATGGACCCGAGGTATAAAATGGAGTTTGTGGAATTAACCTTTTGTCAGATCTTTGGTGAGAATGCTGAGCCATGGATCAGGGTTGTTGAAGATGGTCTTCATGAACTTCTGCACGAATATATCGTAGAACTTCTTCCTTTGACAACTACAGATGAAAATGTAGGGAATGAGATTATGATTAAGACAGAGCCATATGAAGAAGGGTCTCTTGATGGATCAATTATCATAGATACAGAGGGACTTTCAGACTTGGAAATATATATATCTGATATTACCAGTAACCAAATCAAGTCAGAATTGGAACAATATCTGGAAGAGCCTTTAATACCCAGAGTAGAAGAATTTGACATTTTGAGTTGGTGGAGACTAAACAGAACAAATTACCCAACTTTATCTAGAGTGGCTTCTGATATTTTGTCTATGCCATTATCAACTCTCTCAGCAGATTCTGTTTTTGACACAGAAATTAGAAAAATGGATAACTACCGCTGTTCATTAGGCTCCATGACTATTGAGGCACTTTTCTGTACCAAGGACTGGTTGCATTATCAATCATCATTACCTTTAGATGTTCCAATGCACTAA 2094 0.4045 MKDHSWPALPIHAPSNVQFFLLSRIIPAVMEVDTLVSPININEQSDLETHHGKCRRKKSIVWEHFTVKAVGDGITRAYCKQCKKSFAYISGSKVSGTSHLKRHISLGICPASRQKNLQSPHLKNCSSEDASRPKKRVRATPGLGVIPFDQERCNNEMAKMIIAQDYPLQIVEHKGFMDFVRTLQPQFNSLSSTDVHGDCISMYHSEKQNLLNLVRQIPGRVNLTLDLWTSNQTVGYAFLRGHFIDGDWNVHHPILNVIMVPFPDSEDSYNKTIVTCLTDWQLEGRVFTLALDQSSNETLMGNLRGLLSARNPVIFNGQLLSRNCFARLLSRLALDALWAMRETISKVRESVKLVKISNSNEAKFIKLKQQLQVPSTKDLFIDNQTKWDTTYHMLVAACELKEVFACFETPGRDYGMTLSMDDWKRVEILCTYLKQLHDAANLLTCQPYPTANLFFSVVSNLLVELTHAAFSQDPFLSNLIRPLQESFDQYWRESCLVLAAAVAMDPRYKMEFVELTFCQIFGENAEPWIRVVEDGLHELLHEYIVELLPLTTTDENVGNEIMIKTEPYEEGSLDGSIIIDTEGLSDLEIYISDITSNQIKSELEQYLEEPLIPRVEEFDILSWWRLNRTNYPTLSRVASDILSMPLSTLSADSVFDTEIRKMDNYRCSLGSMTIEALFCTKDWLHYQSSLPLDVPMH 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0479 697 SMART bed5 56 112 - -
Lele38g0479 697 Pfam Domain of unknown function (DUF4413) 447 543 IPR025525 GO:0003677
Lele38g0479 697 SUPERFAMILY beta-beta-alpha zinc fingers 59 105 IPR036236 -
Lele38g0479 697 PANTHER BED FINGER-RELATED 197 689 IPR045259 -
Lele38g0479 697 ProSiteProfiles Zinc finger BED-type profile. 56 116 IPR003656 GO:0003677
Lele38g0479 697 SUPERFAMILY Ribonuclease H-like 218 685 IPR012337 -
Lele38g0479 697 Pfam hAT family C-terminal dimerisation region 602 684 IPR008906 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0479 Lele-ChrLele38 3857618 3859711 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0777 41 17626307 17636871 Lele38g0479 38 3857618 3859711 CCT
Lele42g0768 42 20702924 20714452 Lele38g0479 38 3857618 3859711 CCT
Lele38g0479 38 3857618 3859711 Lele41g0748 41 17397299 17398508 CCT
Lele38g0479 38 3857618 3859711 Lele42g0745 42 20484126 20485848 CCT
Lele38g0479 38 3857618 3859711 Lele43g0646 43 5741429 5742516 CCT
Lele38g0479 38 3857618 3859711 Lele44g0599 44 4652592 4654360 CCT
Lele38g0479 38 3857618 3859711 Lele38g0479 38 3857618 3859711 ECH
Lele38g0479 38 3857618 3859711 Lele39g0917 39 18124479 18128989 hybridization
Lele38g0479 38 3857618 3859711 Lele40g0452 40 3723035 3725128 hybridization