Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0475 ATGGCCATTACATCTTTCACTTTATCTTCTCTGCTTCAACCCACCACTTCTTCTATTTCTTCTTCTTGTTCTTCTTACTTCCTTGGTGGGGTCCATCTCCGTTCCCATGAAAGCTTCATCTCCGTCCATTCGCTTTATTCGACGTCAAATTCGGAGGTCCCTTCTAGGCGCATGCGAACAGTGGCCGTTGCTTCTGGCGACTTTTATTCTGCTCTTGGAGTTCCCAAATCCGCCACAAGCAAGGAAATTAAAGCGGCTTATCGAAGGTTAGCTCGCCAGTACCACCCTGATGTGAACAAGGAGCCCGGAGCAACTGAAAAGTTCAAAGAGATTAGTGCTGCATATGAGGTACTATCAGATGAGAAAAAGAGGGCTTTATATGATCAATATGGAGAGGCTGGAGTTAGCGGCACAATGGGAGGAACATCTAGTGCTTATGCGACTAATCCATTTGATTTATTCGAGACATTTTTTGGGCCAAATATGGGTGCCTTCTCTGGAATGGATCCAGCTGGATTTGGAACACGTCGTCGCAGTACTGTTACTAAGGGAGAAGATATCCGTTATGACATGTCATTGGAATTTTCTGAGGTAATTTCTGGAGCAGAGAAAGAATTTGATCTTTCTCATTTGGAGACCTGTGAAGTTTGTATTGGTACCGGAGCAAAGATGGGTTCCAAGATGAGAGTGTGCTCAACTTGTGGCGGTAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGAATGTTCTCTCAGGTTTCAGTATGTCCAAACTGTGGAGGGAATGGCGAAGTCATATCTGAATATTGTGGTAAATGCAGTGGGAAAGGACGTCTACGAGTTAAGAAGAAAATTAAAGTTAAAGTTCCACCTGGGGTTATCTCTGGCAGTATATTGAGAGTTGCTGGGGAGGGTGATGCTGGACCAAGAGGGTCTCCTCCAGGAGATCTTTACGTATATCTTGATGTGAAAGAAATACTAGGAATTGAAAGAGATGGTATTAATCTCTGTTCAACAATCACAATCGGTTACCTAGATGCCATACTTGGTGCCAGTGCCAAGGTAAAGACAGTTGAAGACATTTCCGAACTACAAATACCTCCTGGTACCCAACCTGGAGATGTCCTTGTCCTTGCTAGAAAAGGCGTTCCAAAATTAAATAAACCATCAATACGTGGTGATCATTTATTTACGGTTAAAGTTACCATACCAAAACGTATCAGTACAAAGGAACGTGAGCTGCTTGAAGAACTTGCTTTGCTAGGCAACAACACTACAAGCAACCGATCAAAATCCCGTTCTAGAACTCAATCCTCTGCAGGAAGTACAGAAGGTCCATCATCTCAAAATGCAGAAAGTCCGGCAGCGACAGTTGCAGAAAAAGCTGAAGAATCAGAAGATCAAAATGACATATGGAAAAAGTTAAAGGATCTTGCTAGACCTCTCGCAAATGGAGCATTGAAGTGGCTAAAAGATAATCTCTAG 1488 0.4328 MAITSFTLSSLLQPTTSSISSSCSSYFLGGVHLRSHESFISVHSLYSTSNSEVPSRRMRTVAVASGDFYSALGVPKSATSKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEKKRALYDQYGEAGVSGTMGGTSSAYATNPFDLFETFFGPNMGAFSGMDPAGFGTRRRSTVTKGEDIRYDMSLEFSEVISGAEKEFDLSHLETCEVCIGTGAKMGSKMRVCSTCGGRGQVMRTEQTPFGMFSQVSVCPNCGGNGEVISEYCGKCSGKGRLRVKKKIKVKVPPGVISGSILRVAGEGDAGPRGSPPGDLYVYLDVKEILGIERDGINLCSTITIGYLDAILGASAKVKTVEDISELQIPPGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELALLGNNTTSNRSKSRSRTQSSAGSTEGPSSQNAESPAATVAEKAEESEDQNDIWKKLKDLARPLANGALKWLKDNL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0475 495 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Lele38g0475 495 PRINTS DnaJ domain signature 87 102 IPR001623 -
Lele38g0475 495 PRINTS DnaJ domain signature 103 123 IPR001623 -
Lele38g0475 495 PRINTS DnaJ domain signature 123 142 IPR001623 -
Lele38g0475 495 PRINTS DnaJ domain signature 69 87 IPR001623 -
Lele38g0475 495 CDD DnaJ_C 185 408 - -
Lele38g0475 495 FunFam Chaperone protein dnaJ A6 chloroplastic 214 278 - -
Lele38g0475 495 Gene3D DnaJ domain 64 168 IPR036869 -
Lele38g0475 495 ProSiteProfiles Zinc finger CR-type profile. 201 283 IPR001305 GO:0031072|GO:0051082
Lele38g0475 495 Pfam DnaJ central domain 214 278 IPR001305 GO:0031072|GO:0051082
Lele38g0475 495 Gene3D - 184 320 - -
Lele38g0475 495 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 201 281 IPR036410 -
Lele38g0475 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 416 IPR008971 GO:0006457|GO:0051082
Lele38g0475 495 FunFam Molecular chaperone Hsp40/DnaJ family protein 330 422 - -
Lele38g0475 495 FunFam Chaperone protein dnaJ A6 chloroplastic 64 170 - -
Lele38g0475 495 Gene3D - 330 421 - -
Lele38g0475 495 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Lele38g0475 495 CDD DnaJ 67 120 IPR001623 -
Lele38g0475 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 325 IPR008971 GO:0006457|GO:0051082
Lele38g0475 495 SMART dnaj_3 66 123 IPR001623 -
Lele38g0475 495 Pfam DnaJ C terminal domain 187 405 IPR002939 -
Lele38g0475 495 Hamap Chaperone protein DnaJ [dnaJ]. 64 479 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele38g0475 495 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 29 431 - -
Lele38g0475 495 MobiDBLite consensus disorder prediction 426 456 - -
Lele38g0475 495 SUPERFAMILY Chaperone J-domain 65 172 IPR036869 -
Lele38g0475 495 Pfam DnaJ domain 67 128 IPR001623 -
Lele38g0475 495 TIGRFAM DnaJ_bact: chaperone protein DnaJ 67 420 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele38g0475 495 MobiDBLite consensus disorder prediction 426 470 - -
Lele38g0475 495 Gene3D - 214 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0475 Lele-ChrLele38 3825316 3831817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0475 69 174 C2H2 Transcription Factor Family AT1G74250 38.053 1.42e-10 61.6