Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0460 ATGGTGCAATCAAAGAAATTCAGAGGTGTCAGACAGCGTCATTGGGGCTCATGGGTTTCTGAAATTCGTCATCCTTTATTGAAAAGAAGGGTGTGGCTAGGGACGTTTGATACTGCAGAAGAAGCAGCAAGAGCTTACGATGAAGCAGCCATTTTGATGAGTGGTAGAAATGCGAAAACAAATTTCCCAGTGGCAACCAATAATAACAATAACAATCAAAATAATCATTCTTCTTCTTCTTCTTCCTCATCGTCTTTTTCTGAAGCTCTCAGTGCGAAGCTTCGGAAGTGCTGTAAATCGCCATCTCCATCTCTCACTTGCTTGAGGCTGGACACAGAGAACTGTCACATCGGAGTGTGGCAGAAGCGAGCAGGGCCTCGCTCTGACTCCAACTGGGTCATGATGGTAGAGCTGGAAAGGAAGAAACTTGAAGGCTCAAAAATGACGAGGGAGTCGCCGGCGCCAGAGACAGAGATGGAGGAGAAGGCGAAACCAGAAGAAGAAGATCAGGACAGTGAGCTGGACGAGGAGCAGAAGATGGCGTTGCAGATGATAGAAGAACTCCTTAATAGGAACTGA 579 0.4663 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMSGRNAKTNFPVATNNNNNNQNNHSSSSSSSSSFSEALSAKLRKCCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSDSNWVMMVELERKKLEGSKMTRESPAPETEMEEKAKPEEEDQDSELDEEQKMALQMIEELLNRN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0460 192 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lele38g0460 192 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lele38g0460 192 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lele38g0460 192 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lele38g0460 192 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lele38g0460 192 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lele38g0460 192 MobiDBLite consensus disorder prediction 143 192 - -
Lele38g0460 192 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lele38g0460 192 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lele38g0460 192 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lele38g0460 192 MobiDBLite consensus disorder prediction 62 84 - -
Lele38g0460 192 MobiDBLite consensus disorder prediction 143 161 - -
Lele38g0460 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0460 Lele-ChrLele38 3726710 3727764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0460 1 192 AP2-EREBP Transcription Factor Family AT1G15360 65.534 2.00e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele38g0460 AP2 1.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0460 38 3726710 3727764 Lele38g0460 38 3726710 3727764 ECH
Lele38g0460 38 3726710 3727764 Lele39g0933 39 18247904 18248920 hybridization
Lele38g0460 38 3726710 3727764 Lele40g0432 40 3565798 3566852 hybridization