Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0447 ATGAGTAACGCTTCTTCTTTCGCGGGTCAATTTCATGGTGATGAGAAGTCCACTACTTCATTTGACTTTGAATACGAAGACCCATCGTTCAAGAAGCCCGCAAATCCATCAAAACTCCCAAATTCGAGGGCACAGGTACAGAACGAGGCGAGGGTCCGCTATTTCAAGACTCAACTCTGCAGAAAGTTTAGACAAGGAACTTGTCCACTTGGGTCCGATTGTCGCTTTGCTCATAGTGTTGGAGAGCTTCGGAGGCAAGAATTTGGTTATGACGATAGAACATTTCAGGATTCCAAACTATGCAGAATGTTCTATCAAGGGCAACAATGCTCTTATGGAAACACATGCCGTTTCCTTCATACAAGGCCTGGTGGTTTGAATTCTAGAGACACTGCAACAGTAGAAGTAATTCCTACCGGACATGGTAAAAGAAAATATGATCAATTAGAATTCAAGAGTGGGTTTGATGAGAGTCCTGGTGCTGAAGTGAATACAAAGAGAGAGTTGCTGAAAACAAAGAAGTGCATCAAGTGGGACATGAATGGGCACTGCCCGTATGGACGTATGTGTCGCTTTGCTCATGGGCAAGCAGAATTAGGGAAGCTTGATGGCTACTCAACAGCTGAATGTAGGGTAGTGCAAACTTCTGCTGCTGCAGCTACAAATGTGTCAAGTGGTGTAGTGTCAACTGGCACTTCGCTTAAGAATCTGAACGAATCATTTGAACGGGATTACAAATTCAACAGAAATGAACTACACAGGATCAGTCGAATCTATGCTGACTGGATTTAA 792 0.4356 MSNASSFAGQFHGDEKSTTSFDFEYEDPSFKKPANPSKLPNSRAQVQNEARVRYFKTQLCRKFRQGTCPLGSDCRFAHSVGELRRQEFGYDDRTFQDSKLCRMFYQGQQCSYGNTCRFLHTRPGGLNSRDTATVEVIPTGHGKRKYDQLEFKSGFDESPGAEVNTKRELLKTKKCIKWDMNGHCPYGRMCRFAHGQAELGKLDGYSTAECRVVQTSAAAATNVSSGVVSTGTSLKNLNESFERDYKFNRNELHRISRIYADWI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0447 263 SUPERFAMILY CCCH zinc finger 95 122 IPR036855 GO:0046872
Lele38g0447 263 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Lele38g0447 263 Gene3D - 163 201 - -
Lele38g0447 263 Gene3D - 96 124 - -
Lele38g0447 263 Gene3D - 48 86 - -
Lele38g0447 263 SMART c3hfinal6 54 80 IPR000571 GO:0046872
Lele38g0447 263 SMART c3hfinal6 169 196 IPR000571 GO:0046872
Lele38g0447 263 SMART c3hfinal6 97 122 IPR000571 GO:0046872
Lele38g0447 263 MobiDBLite consensus disorder prediction 1 20 - -
Lele38g0447 263 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 171 196 IPR000571 GO:0046872
Lele38g0447 263 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Lele38g0447 263 PANTHER CCCH ZINC FINGER/TIS11-RELATED 33 127 IPR045877 GO:0003729
Lele38g0447 263 SUPERFAMILY CCCH zinc finger 53 84 IPR036855 GO:0046872
Lele38g0447 263 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Lele38g0447 263 SUPERFAMILY CCCH zinc finger 167 200 IPR036855 GO:0046872
Lele38g0447 263 Pfam CCCH-type zinc finger 99 120 IPR041367 -
Lele38g0447 263 MobiDBLite consensus disorder prediction 1 16 - -
Lele38g0447 263 MobiDBLite consensus disorder prediction 25 45 - -
Lele38g0447 263 ProSiteProfiles Zinc finger C3H1-type profile. 169 197 IPR000571 GO:0046872
Lele38g0447 263 FunFam Zinc finger CCCH domain-containing protein 50 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0447 Lele-ChrLele38 3633229 3634995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0447 169 213 C3H Transcription Factor Family AT1G68200 45.833 4.28e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele38g0447 zf-CCCH 4.2e-06 CL0537