Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0445 ATGAGTAGGCCCGGAGACTGGATGTGCAGGTCATGCCAGCACCTGAACTTTCAGAGAAGGGACATGTGTCAGAGATGTGGGGATTCAAAGTTTGTAGATTTTGTTGGGATTAATGGTGGTGGTGGCTATGGAGGAGGAGGAGGAAGAATGACGATGATGGGATCTTCATTTGGTGGTTCTGATGTTCGTCCCGGGGACTGGTACTGTTCGGCCGGAAACTGTGGTGCTCATAACTTCGCGAGCCGATCAAGCTGCTTCAAGTGTGGTGCTTTCAAAGATGACTTTGCTTCTTCCTTCACCACCACCACTGATTTCTCTTGTTCCAGACCTTTTGCTTCTGCGTCTTCTAGACCTTCATGGAAATCCGGCGACTGGATTTGCAACAGGTCAGGGTGCAACGAGCACAACTTTGCTAGCAGAATGGAATGCTTTAAATGCAGTGCCCCGAGGGACACGTACTAG 462 0.4978 MSRPGDWMCRSCQHLNFQRRDMCQRCGDSKFVDFVGINGGGGYGGGGGRMTMMGSSFGGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDFASSFTTTTDFSCSRPFASASSRPSWKSGDWICNRSGCNEHNFASRMECFKCSAPRDTY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0445 153 Pfam Zn-finger in Ran binding protein and others 121 150 IPR001876 -
Lele38g0445 153 Pfam Zn-finger in Ran binding protein and others 63 90 IPR001876 -
Lele38g0445 153 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Lele38g0445 153 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lele38g0445 153 Coils Coil 150 153 - -
Lele38g0445 153 PANTHER ZINC FINGER PROTEIN 60 151 - -
Lele38g0445 153 ProSiteProfiles Zinc finger RanBP2 type profile. 121 152 IPR001876 -
Lele38g0445 153 Gene3D - 113 152 - -
Lele38g0445 153 Gene3D - 59 94 - -
Lele38g0445 153 Gene3D - 2 31 - -
Lele38g0445 153 FunFam Ran-binding zinc finger protein 57 94 - -
Lele38g0445 153 FunFam Ran-binding zinc finger protein 114 152 - -
Lele38g0445 153 SUPERFAMILY Ran binding protein zinc finger-like 58 94 IPR036443 -
Lele38g0445 153 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lele38g0445 153 SUPERFAMILY Ran binding protein zinc finger-like 115 151 IPR036443 -
Lele38g0445 153 ProSiteProfiles Zinc finger RanBP2 type profile. 63 94 IPR001876 -
Lele38g0445 153 ProSitePatterns Zinc finger RanBP2-type signature. 67 88 IPR001876 -
Lele38g0445 153 ProSitePatterns Zinc finger RanBP2-type signature. 125 146 IPR001876 -
Lele38g0445 153 SMART zf_4 65 91 IPR001876 -
Lele38g0445 153 SMART zf_4 123 149 IPR001876 -
Lele38g0445 153 SMART zf_4 5 29 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0445 Lele-ChrLele38 3622091 3622713 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0818 41 17887775 17892799 Lele38g0445 38 3622091 3622713 CCT
Lele42g0806 42 20947397 20954247 Lele38g0445 38 3622091 3622713 CCT
Lele37g0477 37 3938964 3940785 Lele38g0445 38 3622091 3622713 ECH
Lele38g0445 38 3622091 3622713 Lele38g0445 38 3622091 3622713 ECH
Lele38g0445 38 3622091 3622713 Lele39g0948 39 18351199 18352992 hybridization