Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0440 ATGTGGCGGAGACTTGTATCTTCTCACCTCAAATCCCTAGCCACACTATCCGCTTCTTCTTCCCGATCTGCCCCCATCGCTTGCCGATTCACTCTCAACAATTCTTCTTGTCTCTCTCCTTCGTCCTATTTTCTCAGCCGCCACTTCAGCACCGAGTCTGGGGAAAATGTGGTTAAAAAGAAGGTTGAGGATGTAATGCCTATAGCTACTGGGCATGAGCGCGAGGAGCTTGAGGCCGTGCTTGAGGGAAGGGAGATTCTCGATACAGACCATCCCGAAGGTCCTTTTGGTACAAAGCTAGGTGGTGTGAAACCATTGGTGCATATACCTAGGAGAAATTTCCTATCAACACAGCAATTTGCTGATGACAAGTAA 375 0.4827 MWRRLVSSHLKSLATLSASSSRSAPIACRFTLNNSSCLSPSSYFLSRHFSTESGENVVKKKVEDVMPIATGHEREELEAVLEGREILDTDHPEGPFGTKLGGVKPLVHIPRRNFLSTQQFADDK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0440 124 Gene3D Cytochrome c oxidase, subunit Vb 58 102 IPR036972 GO:0005740|GO:0005751|GO:0006123
Lele38g0440 124 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 99 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lele38g0440 124 SUPERFAMILY Rubredoxin-like 59 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0440 Lele-ChrLele38 3572191 3573744 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0577 43 5187523 5191416 Lele38g0440 38 3572191 3573744 CCT
Lele44g0537 44 4185310 4190465 Lele38g0440 38 3572191 3573744 CCT
Lele37g0472 37 3898058 3901370 Lele38g0440 38 3572191 3573744 ECH
Lele38g0440 38 3572191 3573744 Lele38g0440 38 3572191 3573744 ECH
Lele38g0440 38 3572191 3573744 Lele39g0954 39 18386869 18390165 hybridization
Lele38g0440 38 3572191 3573744 Lele40g0414 40 3406237 3410416 hybridization