Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0417 ATGAGTGGCAATTCGTTAGTGGGCTTGCAAGATCACCTCAAATTGGCGAGGGAATACGCTCTTGAAGGCCTCTATGACACCTCCATCATCTTCTTCGACGGTGCAATTGCCCAGATCAACCAACACTTGAACACTGTAGATGACCCTTTATTGCGTAAAAAATGGATGAGTGTAAAGAAAGCTCTTTCTGAGGAAACAGAAGTAGTGAACCAACTGGAGGCAGAGAGAAAAGCATTCAAAGAAACCCCTAGTGGTAACGGAAGACGTCCTTCTTCGCCTCCCATATCAGCTAAATCATCATCATCATTTGTGTTTCAACCATTAGATGAGTATCCTACTGCATCAAGTGCACCTTTGGATGATCCTGATGTATGGAGGCCACCTAATAGAGATGCCCCAAGTAGAAGACCTACAAGGTCTGGTCAAATGACCACTAGGAAGTCATCACAAGATGGAGCTTGGGCTCGAGGTGCCACTACAAGAACAAGTACAACTAGCCGTGGTGCAAAATCTGGTGCTACAAGTAATTCAGGAGTCAGGGCATCGACTTCTGGAAAGAAAGTTGCCGGTTCTGCTTCTGGAAAGTCGAGCAAGGGAGATTCAGTTAATGGTGATGCTGAAGATGGTAAGCCAAAGAAAGTACAATATGAGGGTCCTGATCCTGACTTGGCTGCAATGCTTGAAAGGGATGTATTAGAAAGCTCTCCTGGAGTGAGATGGGATGATGTTGCAGGGCTGAGTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGGATTCGAAGACCATGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTGTTAGCCAAAGCAGTTGCTACCGAATGTGGTACCACATTCTTCAATGTTTCTTCTGCTACTTTGGCATCAAAGTGGCGTGGAGAGAGTGAGCGTATGGTGCGATGCTTGTTTGATCTTGCAAGAGCACATGCTCCAAGCACAATTTTCATTGACGAGATTGATTCGTTGTGTAATGCTAGGGGGGCATCTGGGGAACATGAATCATCGAGAAGAGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTTCCACAAATGAAGATGGTAGCAGGAAAATTGTAATGGTTTTAGCAGCCACCAACTTCCCTTGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAACGTATTTACATTCCTCTTCCTAATTTTGAGAGCCGTAAAGAGCTGATCCGGATTAATTTGAAGACCGTAGAGGTGGCTCCTGATGTAAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTATAGTGGGGATGATCTGACGAATGTCTGCCGTGATGCTTCCTTGAACGGTATGAGGCGTAAGATAGCAGGGAAGACGCGGGATGAGATAAAGAACATGCCGAAGGATGAGATTTCGAAGGACCCTGTTGCAATGTGCGATTTTGAAGAAGCTTTGGTGAAGGTCCAACGAAGTGTTTCACAGGCTGACATTGAGCGCCATGAGAAATGGTTTTCTGAGTTTGGATCAGCATAA 1578 0.4563 MSGNSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINQHLNTVDDPLLRKKWMSVKKALSEETEVVNQLEAERKAFKETPSGNGRRPSSPPISAKSSSSFVFQPLDEYPTASSAPLDDPDVWRPPNRDAPSRRPTRSGQMTTRKSSQDGAWARGATTRTSTTSRGAKSGATSNSGVRASTSGKKVAGSASGKSSKGDSVNGDAEDGKPKKVQYEGPDPDLAAMLERDVLESSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFSEFGSA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0417 525 Gene3D - 235 516 IPR027417 -
Lele38g0417 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 522 IPR027417 -
Lele38g0417 525 FunFam Katanin p60 ATPase-containing subunit A1 415 501 - -
Lele38g0417 525 Coils Coil 62 82 - -
Lele38g0417 525 MobiDBLite consensus disorder prediction 135 200 - -
Lele38g0417 525 Gene3D - 4 80 - -
Lele38g0417 525 MobiDBLite consensus disorder prediction 77 219 - -
Lele38g0417 525 FunFam Katanin p60 ATPase-containing subunit A1 235 403 - -
Lele38g0417 525 MobiDBLite consensus disorder prediction 85 109 - -
Lele38g0417 525 CDD AAA 271 414 - -
Lele38g0417 525 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 525 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lele38g0417 525 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Lele38g0417 525 ProSitePatterns AAA-protein family signature. 386 405 IPR003960 GO:0005524|GO:0016887
Lele38g0417 525 Pfam AAA+ lid domain 436 477 IPR041569 -
Lele38g0417 525 SMART AAA_5 273 416 IPR003593 -
Lele38g0417 525 MobiDBLite consensus disorder prediction 201 219 - -
Lele38g0417 525 PANTHER AAA DOMAIN-CONTAINING 25 524 - -
Lele38g0417 525 Gene3D - 415 501 - -
Lele38g0417 525 Pfam ATPase family associated with various cellular activities (AAA) 277 414 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0417 Lele-ChrLele38 3362348 3365904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0417 229 517 Calmodulin-binding Proteins AT3G56690 40.339 7.42e-51 185