Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0415 ATGTGTCCGGAGAGTACTGGAACCGCCCGCTACTCCGCCCAGTCCAACGTCACGGAGTTGAAACTGAAGGAGACGGAGCTCACCCTCGGCCTTCCCGGCTCCAATAATCTCACTAGCGCCTCTAAACGTTCCTTCTCAGAAACCACCATCTTCAGCCCAACGTCGTCGTCAACTAGTAACCCAGCACCTAAGGCACAAGCCGTGGGGTGGCCGCCGGTGAGGGCGAGCCGGAAGAACGTGATGAGGAGCTGCAAGTACGTGAAGGTGGCGGTGGACGGAGCTCCATATCTGAGGAAGGTAGATCTTGAGAAGTATGAGAGCTATGATAAGCTGCTCACGGGTTTGGAGGCCATGTTTGGTTCCTTGACAATTCGCAATCATATGAATGAGAGGAAGACGATGGACCTTGGGAATGGGGCAGAGTACGTGCCCACCTATGAGGACAAAGACGGTGACTGGATGCTCGTCGGAGATGTACCTTGGAAGATGTTTGTTGAATCCTGCAAAAGAATCCGGTTGATGATAAAGTCAGAGGCCAGGGGCTTAGAAATTGGAAGAACAGAGTTGAAGTTGGAGGAGAAAACGTGTGGGAATTAA 597 0.5243 MCPESTGTARYSAQSNVTELKLKETELTLGLPGSNNLTSASKRSFSETTIFSPTSSSTSNPAPKAQAVGWPPVRASRKNVMRSCKYVKVAVDGAPYLRKVDLEKYESYDKLLTGLEAMFGSLTIRNHMNERKTMDLGNGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMIKSEARGLEIGRTELKLEEKTCGN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0415 198 ProSiteProfiles PB1 domain profile. 84 178 IPR000270 GO:0005515
Lele38g0415 198 FunFam Auxin-responsive protein 79 186 - -
Lele38g0415 198 SUPERFAMILY CAD & PB1 domains 76 175 - -
Lele38g0415 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 180 IPR003311 GO:0005634|GO:0006355
Lele38g0415 198 MobiDBLite consensus disorder prediction 31 64 - -
Lele38g0415 198 MobiDBLite consensus disorder prediction 31 69 - -
Lele38g0415 198 Pfam AUX/IAA family 53 182 IPR033389 -
Lele38g0415 198 Gene3D - 79 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0415 Lele-ChrLele38 3345314 3346359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0415 58 196 B3 DNA Binding Superfamily AT5G62000 30.000 8.60e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele38g0415 AUX_IAA 1.4e-45 CL0072