Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0412 ATGGATGTTACCTCTCTCAGACCAAATAGTAATGCTCAAACCGATCGATACCCTTTGCTGATGGAGCAGCCAGAAGCCCATAATGGTCACCAGCACGTAATTGACATTACAAGAAATAGTAATGACTTATCCAGCTCTACTCAAGATGATCAACATCCAGAAATGCATTTGCCACATAATGAAGATCAGCCATCAGTTGGCACACAAGTCCCCACTCATCAATCATCTTCATCTTTATCAAGGTTAAGCTCCACAAATTCCTCATCAACAAGAAGAGGCGAGGGACATGGTCATCACAGAAGAAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGGGTCAGATCGTAGCATCTATTGTTGTCTTGTCAATATCCAGGAATGAAAATCCCATAGCTCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGCGTTGCCACACTTCCTATTCTTTACTGCCGTTATCAAAACCGTAATCAAGGCACTGGACGAAATTTATCTCAACCATCGCAAGGCTCTTCTGGAAGCAACCCCCCAGAACGGACTTCTTATACTGCAATCTCTGTTGCTCATGTTTCAGATGAAGAGAATAGTCGTACTACAGAATCAGCTACAGGAAACACTGGGATTCCTGGAGCCTTTAGTACTAGGTTTAATGGTTTAGTAGACCATTTTAAGATGGTCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGATGCTCCAAAATTATATAGATTATGTATAGTATTTCTTACCTTCAGTTGCATTGGATATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGAATTCGAGAGGACTTTTCTCAAACTAGAGGAGCCACAGTTGAATCTATTAATGCCCTGCCTATATATAAGTTCAGTTTGAAGAAAAACGAAAATAGTGATGATCAGAATGGCAATACAGCTATAGATGAAGGAGGGACCTTGGCTTCCGGGACAGAAAAGGAGCGATCCATATCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGCTCCCCTGCTTCCATGTCTTTCATGTTGAGTGTGTAGACAAATGGCTAAAGATAAATGCGTCTTGTCCTCTCTGTAAAAGCGAGGTCGGTACAAGTTTACTTTCGGCAGAGGAGTCCAGTCAGCATTAG 1269 0.4184 MDVTSLRPNSNAQTDRYPLLMEQPEAHNGHQHVIDITRNSNDLSSSTQDDQHPEMHLPHNEDQPSVGTQVPTHQSSSSLSRLSSTNSSSTRRGEGHGHHRRSPLNSGLWISVELVVTVGQIVASIVVLSISRNENPIAPLFAWIVGYASGCVATLPILYCRYQNRNQGTGRNLSQPSQGSSGSNPPERTSYTAISVAHVSDEENSRTTESATGNTGIPGAFSTRFNGLVDHFKMVLDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFSLKKNENSDDQNGNTAIDEGGTLASGTEKERSISGEDAVCCICLAKYADDDELRELPCFHVFHVECVDKWLKINASCPLCKSEVGTSLLSAEESSQH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0412 422 MobiDBLite consensus disorder prediction 40 103 - -
Lele38g0412 422 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Lele38g0412 422 MobiDBLite consensus disorder prediction 169 188 - -
Lele38g0412 422 SMART ring_2 365 405 IPR001841 -
Lele38g0412 422 FunFam E3 ubiquitin-protein ligase 348 414 - -
Lele38g0412 422 CDD RING-H2_RNF111_like 364 406 - -
Lele38g0412 422 SUPERFAMILY RING/U-box 359 411 - -
Lele38g0412 422 MobiDBLite consensus disorder prediction 62 91 - -
Lele38g0412 422 SMART ringv_2 364 406 IPR011016 GO:0008270
Lele38g0412 422 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
Lele38g0412 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 412 IPR013083 -
Lele38g0412 422 Pfam Ring finger domain 365 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0412 Lele-ChrLele38 3301776 3304569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0412 1 412 C3H Transcription Factor Family AT1G80400 55.936 2.57e-166 471